PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008079.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 505aa    MW: 55730.2 Da    PI: 4.7571
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008079.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.29.8e-1331365001374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            lv++L++cAea+++++l+la++l+++   la +++ +m+++a+yf+eALa+r++         l+p+++     + +   ++ f+e++
  Cse_sc008079.1_g040.1 136 LVHTLMACAEALQHKNLSLAETLVKQAGVLAVSQAGAMRKVATYFAEALARRIYA--------LTPKDS----IAFNDVLQSHFYETC 211
                            689***************************************************9........444444....3333334446***** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            P++kf+h+taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++k+ l+e+g++La++Ae+++v+f
  Cse_sc008079.1_g040.1 212 PYIKFAHFTANQAILEAFSGAKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDEKDHLQEVGWKLAQLAETIQVEF 299
                            ***************************************************************9************************ PP

                   GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                            e++ ++a++l+d+e+ +L++++gE laVn+ +++h+ll++++s+e+    vL +vk+++P ++++ve+ea+hn++ Fl+rf+eal+yy
  Cse_sc008079.1_g040.1 300 EYRGFLAESLADIEPGMLDIREGELLAVNSCFEMHQLLARPGSVEK----VLTAVKDMKPVIFTLVEEEANHNGPVFLDRFTEALHYY 383
                            **********************************************....************************************** PP

                   GRAS 265 salfdsleak......lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                            s+lfdsle++      +   s++++ +++++lg++i+nvva eg +r+erh t ++W+ r+e+ GF+pv+l+++a+kqa++ll+ ++ 
  Cse_sc008079.1_g040.1 384 STLFDSLESSgncngeVDGVSNQDKIMSEVYLGKQICNVVASEGVDRVERHMTSSQWKTRFENGGFEPVHLGSNAYKQASMLLALFAg 471
                            *******98877777777778******************************************************************* PP

                   GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            +dgyrvee++g+l+lgW++rpL+++SaW+
  Cse_sc008079.1_g040.1 472 GDGYRVEENNGCLMLGWHTRPLITTSAWK 500
                            ****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    
MLWDGCDGDV DDQDAGVDEL LAILGYKVKP SDMADVAQKI EHLEGVFQND DGLTQLASDS  60
VHYNPSDLST WLESMITELD PTLSNDLQSI PGNAIYPPSK KQKHLDPGQV QSDPVQMVNP  120
VHPAVLIDTQ ENGVRLVHTL MACAEALQHK NLSLAETLVK QAGVLAVSQA GAMRKVATYF  180
AEALARRIYA LTPKDSIAFN DVLQSHFYET CPYIKFAHFT ANQAILEAFS GAKKVHVIDF  240
SMKQGMQWPA LMQALALRPG GPPTFRLTGI GPPSGDEKDH LQEVGWKLAQ LAETIQVEFE  300
YRGFLAESLA DIEPGMLDIR EGELLAVNSC FEMHQLLARP GSVEKVLTAV KDMKPVIFTL  360
VEEEANHNGP VFLDRFTEAL HYYSTLFDSL ESSGNCNGEV DGVSNQDKIM SEVYLGKQIC  420
NVVASEGVDR VERHMTSSQW KTRFENGGFE PVHLGSNAYK QASMLLALFA GGDGYRVEEN  480
NGCLMLGWHT RPLITTSAWK LRFKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein