PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc007442.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 357aa    MW: 39565.8 Da    PI: 9.6448
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc007442.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.5e-09261287127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++t++C+ +  +G+C+yG+rC FaHg+
  Cse_sc007442.1_g040.1 261 WRTRICMKWEHSGHCQYGSRCYFAHGE 287
                            79***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MARNNKSSVR RRFWRFYYLF KPLFSLGFAY FVKYKLLLKI SAAPKMDSLR DDGNVIHIIG  60
GDDKPVSATG YGYDKASGGT TSNLSYGGNA NAANKSIAIQ KLLFKTKWCV ESRSGTCQNA  120
TNCNFAHRSS ELRSLQQNYD DFGLANEHKY LLNTLRESFP QFGTFVDRSL KHCKKFYSEE  180
GCPLGDGCPY VHDLESKYRE RTAIVVSGGR SSSVKRGGRV TAALPPVAPL PVLVALPAWP  240
QSAAPTSPVA EADATVKPPN WRTRICMKWE HSGHCQYGSR CYFAHGEAEL RRYGGALVNP  300
RNQEFNAPNT VAAPGLSVPV ESGAAQLQGA EQRSVQTTWK FPKKLNGIYG DWIDDIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-46C3H family protein