PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007279.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 404aa MW: 47202.4 Da PI: 8.7087

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007279.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.3	1.2e-08	16	96	7	89
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 A+++GF +++ ksk++ g ++ +f Cs++g++++e + ++ + ++++++++C +l k k + w ++ HnH++ Cse_sc007279.1_g020.1 16 AESIGFVIVIGKSKTN--RGYKYSIEFLCSRHGTSSREGLE-DELQWQTSTDKCNCPFRLLAKFIKrFNGWILKVKCPRHNHNF 96 899*******9999..5667***********9999.888889999********999788899998899**86 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
VFGTEVDLIN WVRSTAESIG FVIVIGKSKT NRGYKYSIEF LCSRHGTSSR EGLEDELQWQ 60 TSTDKCNCPF RLLAKFIKRF NGWILKVKCP RHNHNFPDSL HGFSQAMRLK ESELVFVRQM 120 TKKRVAPRII LSSIKEMDPN NVSTIKTVYN AQEKIRRDSR GSLTPIQLLL VHLRRKGYTY 180 YPRINNHTNE LDEIFFVHPT SYALWTTYPE IMLMDSTYNT NMFKLPFFTL DEIFFVHPTS 240 YALWTTYPEI MLMDSTYNTN MFKLPFFTVV GVTPTNTIFS MAFSFLDKEK KPNFKWVMEC 300 VKMVIQEQYY PRPGTKDYGC RYFMWKEIFQ QKYFGEASSS KQCSNCETKD TTINMLLAEN 360 NLLQAKIKAL EASLELARNP VDHACQPSGI LYELIDDINN LHVE

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

VFGTEVDLIN WVRSTAESIG FVIVIGKSKT NRGYKYSIEF LCSRHGTSSR EGLEDELQWQ  60
TSTDKCNCPF RLLAKFIKRF NGWILKVKCP RHNHNFPDSL HGFSQAMRLK ESELVFVRQM  120
TKKRVAPRII LSSIKEMDPN NVSTIKTVYN AQEKIRRDSR GSLTPIQLLL VHLRRKGYTY  180
YPRINNHTNE LDEIFFVHPT SYALWTTYPE IMLMDSTYNT NMFKLPFFTL DEIFFVHPTS  240
YALWTTYPEI MLMDSTYNTN MFKLPFFTVV GVTPTNTIFS MAFSFLDKEK KPNFKWVMEC  300
VKMVIQEQYY PRPGTKDYGC RYFMWKEIFQ QKYFGEASSS KQCSNCETKD TTINMLLAEN  360
NLLQAKIKAL EASLELARNP VDHACQPSGI LYELIDDINN LHVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	EKIRRDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-08	FAR1 family protein