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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc007234.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 193aa MW: 22367.9 Da PI: 10.3285 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.3 | 1.3e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk r+v+fskRr+g++KKA+EL vLCd++v + +fs+t++l eys+ Cse_sc007234.1_g040.1 9 KRIENKGSRHVSFSKRRKGLMKKAHELAVLCDVDVGLFVFSETNRLNEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 14.7 | 1.2e-06 | 80 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ + e+l e++ + e + qR+l ++++ + e q+ +q++ l+ +R++K++l+l ++ lq+k+k l++e++ L++ Cse_sc007234.1_g040.1 80 VHRTVREKLASEHRDICTADELTEMVQRQLEDHKVQQSDATEHWQMVKQIQPVLQLVRTRKTQLMLGAVKALQEKKKLLSKEKQVLER 167 666667777777777777777777888999999999999999999*****************************************99 PP K-box 97 kl 98 ++ Cse_sc007234.1_g040.1 168 EI 169 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence |
MGRGRVELKR IENKGSRHVS FSKRRKGLMK KAHELAVLCD VDVGLFVFSE TNRLNEYSTG 60 ESMIKILTRY QDYKNADEKV HRTVREKLAS EHRDICTADE LTEMVQRQLE DHKVQQSDAT 120 EHWQMVKQIQ PVLQLVRTRK TQLMLGAVKA LQEKKKLLSK EKQVLEREIL AARLSESNVD 180 GRGINIPTKV IFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-33 | MIKC_MADS family protein |