PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007199.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

M-type_MADS

Protein Properties

Length: 370aa MW: 42376.4 Da PI: 7.4784

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007199.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.8	7.9e-25	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en snrqvtfskRrngilKKA+ELSvLCd+++ +++fs+tgk Cse_sc007199.1_g050.1 9 KRLENISNRQVTFSKRRNGILKKAKELSVLCDIDIVLLMFSPTGK 53 689*****************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGRVKLKIKR LENISNRQVT FSKRRNGILK KAKELSVLCD IDIVLLMFSP TGKPTLFTGQ 60 RSNIDEVIAK FARLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFAGSS NQSAEDLSNH 120 AMMLRAQLAD MHRRLSYWSN PDKIDNVEHL KQMEDSLRES LDRIRIHKFP NGLNFPMMMA 180 NNQEDQTIPW LPNNENQNVI LPEKQSYMPH RDGECSGVSV PSFTSLFSAG KQLDMDVKVD 240 QSRQDGGLTE LCSTSNLTPQ FGEQFPYGFI NFAQPKEMKL PETSTNMQGF LDYSMNCNLT 300 PQFEMHRPMY NDNMCHAWNP EPGQCPLPMM DANSYSQHQF PDSVWTIVLC HGSDKCCNKL 360 SNGPFWVTLC

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGRVKLKIKR LENISNRQVT FSKRRNGILK KAKELSVLCD IDIVLLMFSP TGKPTLFTGQ  60
RSNIDEVIAK FARLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFAGSS NQSAEDLSNH  120
AMMLRAQLAD MHRRLSYWSN PDKIDNVEHL KQMEDSLRES LDRIRIHKFP NGLNFPMMMA  180
NNQEDQTIPW LPNNENQNVI LPEKQSYMPH RDGECSGVSV PSFTSLFSAG KQLDMDVKVD  240
QSRQDGGLTE LCSTSNLTPQ FGEQFPYGFI NFAQPKEMKL PETSTNMQGF LDYSMNCNLT  300
PQFEMHRPMY NDNMCHAWNP EPGQCPLPMM DANSYSQHQF PDSVWTIVLC HGSDKCCNKL  360
SNGPFWVTLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	3e-96	M-type_MADS family protein