PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc007069.1_g070.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 276aa    MW: 31256.1 Da    PI: 8.1836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc007069.1_g070.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.6e-212169149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           k+ie+++ rqvtfskRrng++KKA+EL++L++a+ a+++ s+ g+ y +
  Cse_sc007069.1_g070.1 21 KKIEETTSRQVTFSKRRNGLFKKASELCILTGAQMAILVESPGGRCYAF 69
                           68******************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MNVSRVSVMK KNKGRQKIPI KKIEETTSRQ VTFSKRRNGL FKKASELCIL TGAQMAILVE  60
SPGGRCYAFG HPSPDAIIDR YMNNNNNTDD NNENSTINAS TSQKQLPLTE PTINITRLRR  120
NWTSYHGTSK TLTDDNNENS TINASTSQKQ LPLTELNHQY NETSKELEFE KRKNELIQQE  180
KIGSSSELPW YKQDTEGMEV EELEQFLAAL VELKRKVLVR ADDLANARIT ASLSMGPSYS  240
YEKNNTISKM NIVLDNFAVG NNLENTRMID PTMGLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-27M-type_MADS family protein