PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007055.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 347aa MW: 38461 Da PI: 7.4031

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007055.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.3	7.5e-09	22	55	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHt 38 + C+ +++ ++lfC++++ +lC C +++H gHt Cse_sc007055.1_g040.1 22 KPCDSCKSTSAILFCRTDKLHLCIACDVKIH-GHT 55 57****************************9.876 PP
2	zf-B_box	24.7	4.8e-08	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H + H++vp+ Cse_sc007055.1_g040.1 60 VWMCEVCEQSAATVTCKADVAALCVTCDRDIH-SvnplarrHERVPI 105 689****99*******************.44888888999987 PP
3	CCT	71.4	2.3e-24	276	319	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+Rk++KkirY+sRKa+Ae+RpR+KGrFvkq Cse_sc007055.1_g040.1 276 REARVLRYKEKRKNRKYDKKIRYASRKAYAETRPRIKGRFVKQM 319 9*****************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MVDNTDGCGT KSFPLGWTAI AKPCDSCKST SAILFCRTDK LHLCIACDVK IHGHTKHERV 60 WMCEVCEQSA ATVTCKADVA ALCVTCDRDI HSVNPLARRH ERVPIVPFYD SAEDVVRLAN 120 LTAEILTQPI VSDVTCDVTT SMHVQYPLDV PQVMVKSADL FSDRLFDFGF AIPSHVLFQP 180 EYRARAVPIQ TTTGPVMTIP PLGPPIQTVD HKPVATRTPY MMDYTSSTTN QSHSLSVSST 240 SIDEGTASEQ SSIVDISYPL VLPAINNEKK FSAADREARV LRYKEKRKNR KYDKKIRYAS 300 RKAYAETRPR IKGRFVKQME SAAEDGDPCL FTAVCGGEVE YGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MVDNTDGCGT KSFPLGWTAI AKPCDSCKST SAILFCRTDK LHLCIACDVK IHGHTKHERV  60
WMCEVCEQSA ATVTCKADVA ALCVTCDRDI HSVNPLARRH ERVPIVPFYD SAEDVVRLAN  120
LTAEILTQPI VSDVTCDVTT SMHVQYPLDV PQVMVKSADL FSDRLFDFGF AIPSHVLFQP  180
EYRARAVPIQ TTTGPVMTIP PLGPPIQTVD HKPVATRTPY MMDYTSSTTN QSHSLSVSST  240
SIDEGTASEQ SSIVDISYPL VLPAINNEKK FSAADREARV LRYKEKRKNR KYDKKIRYAS  300
RKAYAETRPR IKGRFVKQME SAAEDGDPCL FTAVCGGEVE YGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	6e-63	CO-like family protein