PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006948.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 673aa MW: 77295.2 Da PI: 9.0348

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006948.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.2	1.5e-14	129	221	5	91
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 +YA + GF+++ s+++k+ r+g + ++ ++C++egk ++ + + ++k+ r+r+ tgC a++k+ + +gk++++k++ H Cse_sc006948.1_g010.1 129 AYALRGGFEIKLSSQRKT-RSGFVQHKYLMCNREGKLRNINIDtlksqgNDKAIRNRNLRITGCIARVKLDFDPvSGKYRLAKFNPRH 215 6**********99998.8899*********8887766788888899999**************99********* PP FAR1 86 nHelap 91 nH+l+p Cse_sc006948.1_g010.1 216 NHTLFP 221 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MDNIGEIIRV QVVEGSAGSV CDAEQNESIE LGSVSSVRMV VDSVEKNKNV EGGSEVMSVD 60 DVERVRIVEE GSEVMSVDDV EGVRIVEEGI LAMNEVGDVE RFRFIVEDDI RSGETDDENE 120 THVNGKLFAY ALRGGFEIKL SSQRKTRSGF VQHKYLMCNR EGKLRNINID TLKSQGNDKA 180 IRNRNLRITG CIARVKLDFD PVSGKYRLAK FNPRHNHTLF PEVYRHLSKT ERKMVYSEKL 240 FVMKAKTANI GATVAHHIYS SMKGYDLVHG QVMDFKNYFR ELNCFIGEGD SKMLINKIEN 300 RKAYVPNFSF HYKVEDSELV ALFWADEVMK CNFEEFGDII SFDATFRTNK SRWGDEKAIA 360 AVLPESKHRL CMWHITQKVP AKICKKIYDE TDFKRRFNEI VWDMFLEPRG FEEKWGKLIE 420 DFGLKDHKWR TRMFNMRSAW IPAYFLDSPL FGLMRTTSRS ESENSFFSHF TNEGSTLINF 480 MICNGKAKTH SRANNDIEKI PETYILRRWT RDIIPPDLRR NRNRYGEKNE TIDRFTNEAT 540 CLVDECLHRL SNDEGKMYEI VEQIRTLKKK VDIAVPNPPS KKDDMEKFIG VPKPKRIDVN 600 NPSGAKNKGG TREVRRKSER EKAINAILKP KRKCGECGVK TNTHTKKTCP LGPKSIAATK 660 AAAEKSMNNT ASN

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MDNIGEIIRV QVVEGSAGSV CDAEQNESIE LGSVSSVRMV VDSVEKNKNV EGGSEVMSVD  60
DVERVRIVEE GSEVMSVDDV EGVRIVEEGI LAMNEVGDVE RFRFIVEDDI RSGETDDENE  120
THVNGKLFAY ALRGGFEIKL SSQRKTRSGF VQHKYLMCNR EGKLRNINID TLKSQGNDKA  180
IRNRNLRITG CIARVKLDFD PVSGKYRLAK FNPRHNHTLF PEVYRHLSKT ERKMVYSEKL  240
FVMKAKTANI GATVAHHIYS SMKGYDLVHG QVMDFKNYFR ELNCFIGEGD SKMLINKIEN  300
RKAYVPNFSF HYKVEDSELV ALFWADEVMK CNFEEFGDII SFDATFRTNK SRWGDEKAIA  360
AVLPESKHRL CMWHITQKVP AKICKKIYDE TDFKRRFNEI VWDMFLEPRG FEEKWGKLIE  420
DFGLKDHKWR TRMFNMRSAW IPAYFLDSPL FGLMRTTSRS ESENSFFSHF TNEGSTLINF  480
MICNGKAKTH SRANNDIEKI PETYILRRWT RDIIPPDLRR NRNRYGEKNE TIDRFTNEAT  540
CLVDECLHRL SNDEGKMYEI VEQIRTLKKK VDIAVPNPPS KKDDMEKFIG VPKPKRIDVN  600
NPSGAKNKGG TREVRRKSER EKAINAILKP KRKCGECGVK TNTHTKKTCP LGPKSIAATK  660
AAAEKSMNNT ASN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-32	FAR1 family protein