PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006780.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 305aa MW: 33779.3 Da PI: 6.9991

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006780.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.9e-07	134	155	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+r+ +C+yGd+C+++H Cse_sc006780.1_g030.1 134 ICWKFYRGEECPYGDNCSYSHN 155 67789966***********5 PP
2	zf-CCCH	37.9	2.9e-12	212	237	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C +Gd+C++aHg Cse_sc006780.1_g030.1 212 WKTRICSKWETTGHCVFGDKCNYAHG 237 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MIQHPFNGNN NVGGEFIPHP NVVSNSQFDN SCKRNNSITQ MSTSMTSAGQ RSNRSCTPIS 60 RGATHIFYKT RMCQQFVDGR CPKAADCCNY AHGHNDLREP VPNWQENANN NKGGVRNGSG 120 NWNEDHKRTP QRGICWKFYR GEECPYGDNC SYSHNASQLN VGAVMDSEQI RESSVVNIKT 180 VFDHGQSQTE ATAVQVNTHP DFSQTSMKNN YWKTRICSKW ETTGHCVFGD KCNYAHGLAE 240 LNTPVGLVEG DGSVAANAVH VPITEPLVTH SAAAAPVHIG SELLNLAKRK VKGIYGDWID 300 DEYEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-48	C3H family protein