PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc006722.1_g090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29968.7 Da PI: 6.7796 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.8e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + G +W+ +++ g+ R++k+c++rw +yl Cse_sc006722.1_g090.1 14 RGPWTMEEDRKLMSFIINNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++ Cse_sc006722.1_g090.1 67 RGTLSEAEEDQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 678899****************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MGRKPCCDRA GLKRGPWTME EDRKLMSFII NNGIQCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGTL SEAEEDQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG 120 VDPNTHKHTD EEKKQDSGEK KGQCAIMSKA ENTKVDCGKV DEPEHEKDLT SKIHDNMVSK 180 SIDIDSWTNT NQENSTSISK SDTYSHSFED SFSINPHSSI GDSSLFEGDY SLEQWVDGGD 240 SLLLWDCFNQ QEDLFVFLGN Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 2e-82 | MYB family protein |