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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc006661.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28236.4 Da PI: 10.0079 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+ey++ Cse_sc006661.1_g030.1 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 95.2 | 1e-31 | 82 | 174 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + e++++ s++ e++kL+++ie L+++++h++Ge+Le+Lsl+eLq++eqq+e++lk+iR++Kn++++e+i++l kke++lqe+n++L+ Cse_sc006661.1_g030.1 82 APETETQGSWTLESSKLRAKIEVLEKNIKHYVGEELEPLSLRELQSVEQQIETALKRIRTRKNQVMHESISDLHKKERALQEQNNTLS 169 456777899******************************************************************************* PP K-box 96 kklee 100 kkl+e Cse_sc006661.1_g030.1 170 KKLKE 174 **986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYATH 60 SSMDAILERY ERYSYAEKLL TAPETETQGS WTLESSKLRA KIEVLEKNIK HYVGEELEPL 120 SLRELQSVEQ QIETALKRIR TRKNQVMHES ISDLHKKERA LQEQNNTLSK KLKENDKNIE 180 QRNAGFVLPP PQPQLPPPPP QPPHSLAPLI IGSGSFQGAA AIREDDPAQT HTMSATMMPA 240 WLLRHMNQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-89 | MIKC_MADS family protein |