PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006659.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 888aa MW: 101330 Da PI: 8.8481

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006659.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.6	7.1e-07	85	135	2	53
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 +Y +YA+evG +rks++k+ r+g ++++ +vC++eg +++ + +t +++ Cse_sc006659.1_g030.1 85 MYMRYASEVGVGIRKSTQKRL-RDGFVKEKYLVCNREGCPKKIRLNTLASKK 135 8*************99998.9999**********99987777444444 PP
2	FAR1	54.7	3.4e-17	153	247	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +Y +YA+e+GF +rks++k+ r g ++++ +vC++eg +++ + + +k+ rt++ tgCka+ + +++ + k+++t+++ Cse_sc006659.1_g030.1 153 MYMRYASEAGFGIRKSTQKRL-RGGFVKEKYLVCNREGCPKKIRLNtlapkkGDKQVRTSNFRITGCKARAVFHMMPgSRKYRLTTFD 239 8*************99998.8999**********998888899887788888999999*********9****** PP FAR1 83 leHnHela 90 eHnHel Cse_sc006659.1_g030.1 240 VEHNHELD 247 ****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MEIFDLNEVP VGVDSIDLDV TSSNCASNVD DNASSSSGLK TPSSFIHHDF IDTPGGSVFW 60 VPRVAASVLP VFFSVYDSVE DCISMYMRYA SEVGVGIRKS TQKRLRDGFV KEKYLVCNRE 120 GCPKKIRLNT LASKKGDKQV RTFYDSVEDC ISMYMRYASE AGFGIRKSTQ KRLRGGFVKE 180 KYLVCNREGC PKKIRLNTLA PKKGDKQVRT SNFRITGCKA RAVFHMMPGS RKYRLTTFDV 240 EHNHELDRVE YKHLSKSEMK LTYTEQLFII KASNYNIGAT RAHSLYTGLK GSSTLVHGTE 300 TEFNNLVRGI NCFIGDSDAQ MLINRMEDRM KFTSDFSFDY LVENAELIGL FWADQVAKLN 360 YKEFGDIVSF DATYKTNKYR MVFVTFTAID NHRRSVTVGS GLLKNETTES YVWLLQAFKK 420 AFVRSPNIIV TDQDGAMRKA IAEVLPDSKH RLCMWHIMQK LPSKNKFHKI VWNMYIGPEE 480 FEIRWNELVV EFGLLNHKWL NKMYRIRASW IPAFFVDSPL CGLMRTTSRS ESENSFFSHF 540 TSPTSTLVKF MVCYESAMEK QRYIQERLDH QSIDSFPTLL TPLGIEIHAT RFYTRKLFVL 600 VQKEIIAGSW LCSIKSKICG DGCDVSVISE EKPDADIVPR VVDDESTSEN TEEELNLYQK 660 DIGEYEVVYN KVDGSVACCC QLFVRCGILC RYIFCVFKNC KVVSIPDQYL LRRWTRDLIP 720 ADLRRQKARY GQKNEEIERL AIEATGLVES CVHMMSNNKG KLTSFVDKLK KLKTEVEADL 780 PTVPSRNVSE IVEEFMGIKK PIKIYVKNPS KASNKGFMRE RIKGGREKAF DKSKKQKKSC 840 SICGSTEHNR TTCPDKGKYL TNNAEIGGSS AEGVLVQFEV ESSAQPLQ

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MEIFDLNEVP VGVDSIDLDV TSSNCASNVD DNASSSSGLK TPSSFIHHDF IDTPGGSVFW  60
VPRVAASVLP VFFSVYDSVE DCISMYMRYA SEVGVGIRKS TQKRLRDGFV KEKYLVCNRE  120
GCPKKIRLNT LASKKGDKQV RTFYDSVEDC ISMYMRYASE AGFGIRKSTQ KRLRGGFVKE  180
KYLVCNREGC PKKIRLNTLA PKKGDKQVRT SNFRITGCKA RAVFHMMPGS RKYRLTTFDV  240
EHNHELDRVE YKHLSKSEMK LTYTEQLFII KASNYNIGAT RAHSLYTGLK GSSTLVHGTE  300
TEFNNLVRGI NCFIGDSDAQ MLINRMEDRM KFTSDFSFDY LVENAELIGL FWADQVAKLN  360
YKEFGDIVSF DATYKTNKYR MVFVTFTAID NHRRSVTVGS GLLKNETTES YVWLLQAFKK  420
AFVRSPNIIV TDQDGAMRKA IAEVLPDSKH RLCMWHIMQK LPSKNKFHKI VWNMYIGPEE  480
FEIRWNELVV EFGLLNHKWL NKMYRIRASW IPAFFVDSPL CGLMRTTSRS ESENSFFSHF  540
TSPTSTLVKF MVCYESAMEK QRYIQERLDH QSIDSFPTLL TPLGIEIHAT RFYTRKLFVL  600
VQKEIIAGSW LCSIKSKICG DGCDVSVISE EKPDADIVPR VVDDESTSEN TEEELNLYQK  660
DIGEYEVVYN KVDGSVACCC QLFVRCGILC RYIFCVFKNC KVVSIPDQYL LRRWTRDLIP  720
ADLRRQKARY GQKNEEIERL AIEATGLVES CVHMMSNNKG KLTSFVDKLK KLKTEVEADL  780
PTVPSRNVSE IVEEFMGIKK PIKIYVKNPS KASNKGFMRE RIKGGREKAF DKSKKQKKSC  840
SICGSTEHNR TTCPDKGKYL TNNAEIGGSS AEGVLVQFEV ESSAQPLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	767	772	DKLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-70	FAR1 family protein