PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006543.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 440aa    MW: 49833.5 Da    PI: 7.4928
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006543.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.21.1e-07131169342
                   FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 
                            Y +YA+++GF vrks +k+  r+g ++++ +vC++eg ++
  Cse_sc006543.1_g020.1 131 YMKYASKAGFVVRKSCQKRL-RSGIVKQKYLVCNREGCPK 169
                            99************998887.8898************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MDSIPNSSVS SYRSSSSQEI GATELSTTDS TTESAPENTV VSITESAIED IGVSDDVSAK  60
YTEEIVAYEH GDESAAIKKL NALKTSESFS THSNFDTPGG TVYYIPKVPV DVLLAKGNVF  120
NSVDDQCISA YMKYASKAGF VVRKSCQKRL RSGIVKQKYL VCNREGCPKG IHGSYLLVHG  180
TTVDFKNFFR SVNCYIGDSD AQMLIAKMEN RQKHVPDFSI DYLVENAELS AIFWADEVSK  240
YNYKEFCDVV SFDATYRTNK YKMMFVPFTA IDNHRKCVTV AAGLLKNETA NSYIWLLKAF  300
IKAFGKAPSI VVTDQDGAMR KAIEQEFSGS KHRLCMWHIT QKLPGKICSK IYDHTDFKRK  360
FNQIVWNMYI GPDEFEYQWG KLLDEFNLHN HKWLTKMFRI RSCWIPAFFV DSPLCGLMRT  420
TSRSESENSF FSHFTNSGSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-45FAR1 family protein