PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006539.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 539aa MW: 59624 Da PI: 6.4082

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006539.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.8	8.7e-16	364	415	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Cse_sc006539.1_g010.1 364 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 415 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MANDNKWLSF SLSPMEMFTS ATSQPQQYYF NDTNHFYANN GWTNNSAKPS TMYNTNTNTD 60 MKDGADSPHF RSFMESHMNQ PPAPKLEDFL GGDTTQSFRY TDMSQQQQQQ TETQDSSTLT 120 HMYDGNNNNN NNTCVYFSDQ QENNNNLNGM NGFQTFSTNS GSEVDDSATH VTAEFANDQS 180 GNNNNNNNEL AYVQCPMNAL SLGMNSSGAS GGGGGGAAQQ LCEQKAIVAV DTSDQNNVKK 240 PIGDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQGTIMP HSVIQHIDSS 300 GYDKEDKAAR AYDLAALKYW GPTATTNFPV ANYAQELQDM KNATKQEFIA SLRRKSSGFS 360 RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGINAVT 420 NFEMNRYDVE AISSSSLPVG GSGKRLKVST EVEQKPSLIS NHQLPQYSSG NTGNNISFGG 480 VPPVYALPYD PNSTTQMYHH QSLFHHLQSG NGGAVPESSS AMALLPPPAE FYIWPNQSY

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MANDNKWLSF SLSPMEMFTS ATSQPQQYYF NDTNHFYANN GWTNNSAKPS TMYNTNTNTD  60
MKDGADSPHF RSFMESHMNQ PPAPKLEDFL GGDTTQSFRY TDMSQQQQQQ TETQDSSTLT  120
HMYDGNNNNN NNTCVYFSDQ QENNNNLNGM NGFQTFSTNS GSEVDDSATH VTAEFANDQS  180
GNNNNNNNEL AYVQCPMNAL SLGMNSSGAS GGGGGGAAQQ LCEQKAIVAV DTSDQNNVKK  240
PIGDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQGTIMP HSVIQHIDSS  300
GYDKEDKAAR AYDLAALKYW GPTATTNFPV ANYAQELQDM KNATKQEFIA SLRRKSSGFS  360
RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGINAVT  420
NFEMNRYDVE AISSSSLPVG GSGKRLKVST EVEQKPSLIS NHQLPQYSSG NTGNNISFGG  480
VPPVYALPYD PNSTTQMYHH QSLFHHLQSG NGGAVPESSS AMALLPPPAE FYIWPNQSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-135	AP2 family protein