PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006505.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 500aa MW: 54847.3 Da PI: 5.4983

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006505.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.4	3.9e-16	303	349	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Cse_sc006505.1_g030.1 303 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 349 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MMNHIVPEFE TEEDCLIPDM HKKSTMGGDE DIMELLWHNG QVVMQSQNQR SSGNKKPETR 60 LMVQSTEQQQ TGPSDLFMQE DEMSSWLHYP VEYPANENSL EGYLYNNDLL FPTPPPNPVT 120 TTPITPTTLP PPPPPSVVIH SPRPPVAPIW RNRGDIQPRQ QPKYPNFLHF SRPNKAKTPE 180 SGPSAPVTEA PESRASRVSE KPPPTSAGGE SVSGVGLVGT SSMDREVETC DTSMMSSPDG 240 SGASGSIEPS TQMPPPSTND RKRKGRDTED TECHSEDVEF EFPDAKKQSH GSTSTKRSRA 300 AEVHNLSERR RRDRINEKMK ALQELIPRCN KSDKASMLDE AIEYLKSLQM QVQMMSMGCG 360 MVPMMFPGVQ QYVSPMAMGM GMGMGMGMDI GMNRPIVPYP AILPGPSMPN PAASAAAAAA 420 QLGQRFPVPG FNMSPVAVAG QAANMSAPMM SSFPLQNQNQ PRIPNFADPY QQPKEAFPQL 480 QPSLAVAKML PTIIITKMVD

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MMNHIVPEFE TEEDCLIPDM HKKSTMGGDE DIMELLWHNG QVVMQSQNQR SSGNKKPETR  60
LMVQSTEQQQ TGPSDLFMQE DEMSSWLHYP VEYPANENSL EGYLYNNDLL FPTPPPNPVT  120
TTPITPTTLP PPPPPSVVIH SPRPPVAPIW RNRGDIQPRQ QPKYPNFLHF SRPNKAKTPE  180
SGPSAPVTEA PESRASRVSE KPPPTSAGGE SVSGVGLVGT SSMDREVETC DTSMMSSPDG  240
SGASGSIEPS TQMPPPSTND RKRKGRDTED TECHSEDVEF EFPDAKKQSH GSTSTKRSRA  300
AEVHNLSERR RRDRINEKMK ALQELIPRCN KSDKASMLDE AIEYLKSLQM QVQMMSMGCG  360
MVPMMFPGVQ QYVSPMAMGM GMGMGMGMDI GMNRPIVPYP AILPGPSMPN PAASAAAAAA  420
QLGQRFPVPG FNMSPVAVAG QAANMSAPMM SSFPLQNQNQ PRIPNFADPY QQPKEAFPQL  480
QPSLAVAKML PTIIITKMVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	313	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	4e-57	bHLH family protein