PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006502.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 398aa MW: 43458.2 Da PI: 5.8542

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006502.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.4	9.5e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C++++e + +C+++ +lC +C H+ H++ Cse_sc006502.1_g010.1 4 QCDHCGEARSMVYCRSDAAYLCLSCDRLVHSAnalskrHSR 44 5**************************99955666666765 PP
2	zf-B_box	28.2	4e-09	46	86	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htvvp 41 +C++++++++ + C + + lC++C +H+g H++++ Cse_sc006502.1_g010.1 46 LVCDRCNSQPAVIRCLEEKISLCQNCDWDGHNGvstHSRQT 86 68*****************************9999998876 PP
3	CCT	59.1	1.5e-20	341	384	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+k RkF+K++rY++RK++A+ R+RvKGrFvk+ Cse_sc006502.1_g010.1 341 RSDAVLRYKEKKKMRKFDKRVRYATRKERADVRKRVKGRFVKAG 384 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MGCQCDHCGE ARSMVYCRSD AAYLCLSCDR LVHSANALSK RHSRTLVCDR CNSQPAVIRC 60 LEEKISLCQN CDWDGHNGVS THSRQTLNCY SGCPSAEELS SIWSFMSESI SVIDSTCEQG 120 MGSMCIADTR QGPSTSNKNQ DLIVTSETKC LQSENNPNVW MGPSSSRVGN RPPNVVQDAG 180 PVTSSSSKVS HSGTKDLEQF VDDDGLYVDF NMDEVDLSIE NYEVLFGVGH NDPEHLFAKD 240 GIDSLFGGAE SSYAAKESST GMGNPAQPAC SNAASAESLI SCKTEPTRYG RQHSNISFSS 300 LTGESTAGDY QDCGASSMLL MAEPPWGPTG PDQSATPIGS RSDAVLRYKE KKKMRKFDKR 360 VRYATRKERA DVRKRVKGRF VKAGDAYDYD PMSQTRSF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MGCQCDHCGE ARSMVYCRSD AAYLCLSCDR LVHSANALSK RHSRTLVCDR CNSQPAVIRC  60
LEEKISLCQN CDWDGHNGVS THSRQTLNCY SGCPSAEELS SIWSFMSESI SVIDSTCEQG  120
MGSMCIADTR QGPSTSNKNQ DLIVTSETKC LQSENNPNVW MGPSSSRVGN RPPNVVQDAG  180
PVTSSSSKVS HSGTKDLEQF VDDDGLYVDF NMDEVDLSIE NYEVLFGVGH NDPEHLFAKD  240
GIDSLFGGAE SSYAAKESST GMGNPAQPAC SNAASAESLI SCKTEPTRYG RQHSNISFSS  300
LTGESTAGDY QDCGASSMLL MAEPPWGPTG PDQSATPIGS RSDAVLRYKE KKKMRKFDKR  360
VRYATRKERA DVRKRVKGRF VKAGDAYDYD PMSQTRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-107	CO-like family protein