PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006426.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 328aa MW: 36815.1 Da PI: 7.4184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006426.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	153	172	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Cse_sc006426.1_g080.1 153 FSCTVCNKTFNRYNNMQMHM 172 89*****************9 PP
2	zf-C2H2	14.2	0.00013	238	260	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk+F + + ++H +++ Cse_sc006426.1_g080.1 238 YGCRKCGKPFAVRGDWRTHEKNC 260 67*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MQTHSSFTKM SSTSESMGCF GRDEVYEDSI LLSLSPPGRA QNHDSSKYFN HDHGYHFNIP 60 SPKHYSCHPN PNKDLNPNLN LNLNLSLDAS ISSCEDGVTV ALHIGQPASA SSVSEGGASS 120 FTMNTNMNTS IAPDHLQYWI PTPAQIMVGP TQFSCTVCNK TFNRYNNMQM HMWGHGSQYR 180 KGPESLRGTK PASSMLRLPC YCCAEGCKNN IDHPRSKPLK DFRTLQTHYK RKHGEKPYGC 240 RKCGKPFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIQAFGSGHA PHYTSEDLLE 300 IDEDIENLDE EDKKSSIGGH DDDSFLMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-109	C2H2 family protein