PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc006404.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 372aa MW: 42534.9 Da PI: 8.5372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l +++++G +W+ +r g+ R++k+c++rw +yl Cse_sc006404.1_g040.1 14 KGAWSEDEDAKLRAYIERYGHSNWRELPRLAGLSRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 25 | 4.3e-08 | 68 | 102 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+ T+eE++l+v +++++G++ ++ gR+++++k++w+ Cse_sc006404.1_g040.1 68 GNYTKEEEDLIVSLHNRFGNK--------LP-GRSDNEIKNHWH 102 789****************99........**.***********7 PP | |||||||
3 | Myb_DNA-binding | 35.7 | 2e-11 | 216 | 295 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT..................................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..................................tWktIartmgkgRtlkqcksrwqkyl 48 g++T+eE++++vd ++++ ++ W+ a+ ++ gR+++++k++w+++l Cse_sc006404.1_g040.1 216 GNFTKEEQDIIVDIHRKHSNNlhplssallsgetsssphteypkddslrdyalsdLWSMMAAQLP-GRSDNEIKNYWHTHL 295 89***************************************************************.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence |
MVRAPCFDKH GIKKGAWSED EDAKLRAYIE RYGHSNWREL PRLAGLSRCG KSCRLRWMNY 60 LRPNVKHGNY TKEEEDLIVS LHNRFGNKLP GRSDNEIKNH WHIHLKNRAP KAQPVFKIEQ 120 PEIPEPVVIN PKRYPVTKPS PSYSSISNYS SQCSLSVSDY EVSSDVTPQF SKPSEYSWIE 180 PYLANNNSVE SSSDSISGKS CRQRWMNYVR PNVKHGNFTK EEQDIIVDIH RKHSNNLHPL 240 SSALLSGETS SSPHTEYPKD DSLRDYALSD LWSMMAAQLP GRSDNEIKNY WHTHLKNRVN 300 RESTIMRNEH TEILEPSQAC VEGCSIKMSN LKTTQDEVMI LLAVLSSPSP SSFQQVKCHP 360 ANSVSQIMLL SL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-48 | MYB family protein |