PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006328.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 360aa MW: 41234.8 Da PI: 6.6421

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006328.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.8e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ + ++G+g +W + +++ g++R++k+c++rw++yl Cse_sc006328.1_g010.1 14 RGPWSPEEDAKLKGFIDKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	38.2	3.4e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ Cse_sc006328.1_g010.1 69 GEFTDDEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGRAPCCDKD NVKRGPWSPE EDAKLKGFID KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAM 120 LPPSFHKRPS FFPSLPLQST PLYTPNHFLT NNTSPFYGYN TTNFMNMNMN MSNQDHMNIT 180 QFQPPQPQDP NSLVGLITNN IDNNDNSFYL GFQDTHPMEY NYPTSDVKEA MLMFGNYNKD 240 HHEVSTTGSS SEGGSCLSQL SFGNYDNKQQ HIKQEDQFGL QGTFGDQNQS FIINNMSYTD 300 QKPKGYSLKN NFESLLQSDL EEVKQLIGNN TNSTNSSYLL NDDDEYKTTH DDHKEICYHY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGRAPCCDKD NVKRGPWSPE EDAKLKGFID KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAM  120
LPPSFHKRPS FFPSLPLQST PLYTPNHFLT NNTSPFYGYN TTNFMNMNMN MSNQDHMNIT  180
QFQPPQPQDP NSLVGLITNN IDNNDNSFYL GFQDTHPMEY NYPTSDVKEA MLMFGNYNKD  240
HHEVSTTGSS SEGGSCLSQL SFGNYDNKQQ HIKQEDQFGL QGTFGDQNQS FIINNMSYTD  300
QKPKGYSLKN NFESLLQSDL EEVKQLIGNN TNSTNSSYLL NDDDEYKTTH DDHKEICYHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-71	MYB family protein