PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006260.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 743aa MW: 86253.4 Da PI: 5.1534

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006260.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.9	2e-11	483	571	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdql 85 +W+++ + +L+e+ ++ +l+r++l++ +W ev++k++e ++e++ qC+ ++e l+++ykk+k+ +++ + ++ +f+++ Cse_sc006260.1_g030.1 483 EWSENATFVLLEVWGDRYMQLGRRSLRGEDWVEVAEKISEMcKMEINDGQCRTRFETLKQKYKKEKAKMEGSgmGHGYYGKWGFFKKM 570 5***********************************775378*******************98776652335666789999998 PP trihelix 86 e 86 + Cse_sc006260.1_g030.1 571 D 571 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence
MCKMEINDGQ CRTRFETLKQ KYKKEKAKME GSGMGMGHGH YGKWGFFKKM DMLLSPKRQH 60 NGLPCGVDSG EYVFMNTKVY LNQSNALDEM RDSPGESEVD EDMRMRMMLE LEKMRMDFQR 120 ELELQKKVIL ERAQAEIAKI REEDDEDANS CTETASVLQN ASKDSLVILD ELGRGTSTFD 180 GYAIAYAVFR HLVEKVNCRL LFATHYHPLT KEFAAHPHVT LQHMACAFKS ISSTSQSSCR 240 EGQLWIAIRY TTHTPKSSPP TLTLHYNTWP VLSNPCPVPH SQPTNSIPQK VVEAATKAAE 300 VMKTKIGVSF RSSEQRSEFS TLHEEWLKSV LAMSRVDDHK LEGDDKDDVF DELFCLWHEF 360 KCSNKKLMRP IRNNNYTNNY NDYDNDFEQP ESPLAPPINN RFNYHQHQHV NIVNDDSDNS 420 LDDDDDEDDN NNNNNEYQQQ YYNQYYNVGE TSTRRHQKKR RLDNLVGGYG YAPRVNVSNV 480 MDEWSENATF VLLEVWGDRY MQLGRRSLRG EDWVEVAEKI SEMCKMEIND GQCRTRFETL 540 KQKYKKEKAK MEGSGMGHGY YGKWGFFKKM DMLLSPKRQH NGLPCGVDSG EYVFMNTKVY 600 LNQSNALDEM RDSPGESEVD EDDDDEEEDE DGDGLNEEDE EGFKLLAESV QNFGEIYEKI 660 EGRKRQQMLE LEKMRMDFQR ELELQKKVIL ERAQAEIAKI REEDDEDANS WQRILKSRRQ 720 LKCLHIKSSS SILYSHNLGA SYV

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence

MCKMEINDGQ CRTRFETLKQ KYKKEKAKME GSGMGMGHGH YGKWGFFKKM DMLLSPKRQH  60
NGLPCGVDSG EYVFMNTKVY LNQSNALDEM RDSPGESEVD EDMRMRMMLE LEKMRMDFQR  120
ELELQKKVIL ERAQAEIAKI REEDDEDANS CTETASVLQN ASKDSLVILD ELGRGTSTFD  180
GYAIAYAVFR HLVEKVNCRL LFATHYHPLT KEFAAHPHVT LQHMACAFKS ISSTSQSSCR  240
EGQLWIAIRY TTHTPKSSPP TLTLHYNTWP VLSNPCPVPH SQPTNSIPQK VVEAATKAAE  300
VMKTKIGVSF RSSEQRSEFS TLHEEWLKSV LAMSRVDDHK LEGDDKDDVF DELFCLWHEF  360
KCSNKKLMRP IRNNNYTNNY NDYDNDFEQP ESPLAPPINN RFNYHQHQHV NIVNDDSDNS  420
LDDDDDEDDN NNNNNEYQQQ YYNQYYNVGE TSTRRHQKKR RLDNLVGGYG YAPRVNVSNV  480
MDEWSENATF VLLEVWGDRY MQLGRRSLRG EDWVEVAEKI SEMCKMEIND GQCRTRFETL  540
KQKYKKEKAK MEGSGMGHGY YGKWGFFKKM DMLLSPKRQH NGLPCGVDSG EYVFMNTKVY  600
LNQSNALDEM RDSPGESEVD EDDDDEEEDE DGDGLNEEDE EGFKLLAESV QNFGEIYEKI  660
EGRKRQQMLE LEKMRMDFQR ELELQKKVIL ERAQAEIAKI REEDDEDANS WQRILKSRRQ  720
LKCLHIKSSS SILYSHNLGA SYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-70	Trihelix family protein