PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006233.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 638aa MW: 73419.6 Da PI: 6.9553

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006233.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.1	2.2e-16	102	197	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 ++Y++YA+ GF+++ks ++ + ++g + ++ +C+keg +++ + + + k++r+++ + tgC+a++++++++ +g++++ ++ Cse_sc006233.1_g030.1 102 EMYSTYAEAGGFQIKKSGQRLT-KSGMVQHKYIMCNKEGIPRRINIDtldpqnSYKQKRNTTLHITGCRARIRLELDQvSGRYKLVQF 188 58*************99888.778899*******998877778888788899999999******************** PP FAR1 82 eleHnHela 90 +HnH l Cse_sc006233.1_g030.1 189 IAKHNHVLI 197 ****996 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MNENQNLIDV IDENNLIEVP LDVVNTISVV DDLPDLEDDL QEVEDTTGFF EKEIEDSMRS 60 PRPTLYEHAE TPNGSIYWEP HVEGIRVPEV GRYYDTIEEV IEMYSTYAEA GGFQIKKSGQ 120 RLTKSGMVQH KYIMCNKEGI PRRINIDTLD PQNSYKQKRN TTLHITGCRA RIRLELDQVS 180 GRYKLVQFIA KHNHVLIPKE YKHFTKKQRR MTQADKMFIV KAATNKIGAT QAHNFLTSLK 240 GGYEYVHGAS DDFKNHQRDI NAFIGESDAE ILINKMENRK MYVPNFTFQY KVENSELVAM 300 FWADEVAKCN YKDFGDIVSF DATFRSNKTD HVLTDQDGAM KKAIEAVFTN SKHRLCMWHI 360 DQKIHAKICQ PIYKETDFKK RFKKIVWNMF MEPLEFEEKW AKLIEDLGLK NHKWMIKMFK 420 LRKMWIPTYF IDSPLFGLMR TTPRSESENS FFKSFTSPGA TLVSFMMSYE AAMERQRYRQ 480 EHLDFKTLDA APKCETRLKI EHHATKVYTR TISLLVQKEI TEACWTCSIQ NLKIEEGCEI 540 VMVRDKNPMP YRTLNKEIEA ESDTEAQTVV DYKVPHNYHQ SGVANPTRSG LGVGTGSVVG 600 QAGQVNVVAR EADKVNPNGS GVSVKVGGYG SSEPTSVD

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MNENQNLIDV IDENNLIEVP LDVVNTISVV DDLPDLEDDL QEVEDTTGFF EKEIEDSMRS  60
PRPTLYEHAE TPNGSIYWEP HVEGIRVPEV GRYYDTIEEV IEMYSTYAEA GGFQIKKSGQ  120
RLTKSGMVQH KYIMCNKEGI PRRINIDTLD PQNSYKQKRN TTLHITGCRA RIRLELDQVS  180
GRYKLVQFIA KHNHVLIPKE YKHFTKKQRR MTQADKMFIV KAATNKIGAT QAHNFLTSLK  240
GGYEYVHGAS DDFKNHQRDI NAFIGESDAE ILINKMENRK MYVPNFTFQY KVENSELVAM  300
FWADEVAKCN YKDFGDIVSF DATFRSNKTD HVLTDQDGAM KKAIEAVFTN SKHRLCMWHI  360
DQKIHAKICQ PIYKETDFKK RFKKIVWNMF MEPLEFEEKW AKLIEDLGLK NHKWMIKMFK  420
LRKMWIPTYF IDSPLFGLMR TTPRSESENS FFKSFTSPGA TLVSFMMSYE AAMERQRYRQ  480
EHLDFKTLDA APKCETRLKI EHHATKVYTR TISLLVQKEI TEACWTCSIQ NLKIEEGCEI  540
VMVRDKNPMP YRTLNKEIEA ESDTEAQTVV DYKVPHNYHQ SGVANPTRSG LGVGTGSVVG  600
QAGQVNVVAR EADKVNPNGS GVSVKVGGYG SSEPTSVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-49	FAR1 family protein