PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006165.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 457aa MW: 52037.1 Da PI: 8.6209

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006165.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.1	3.2e-09	52	110	40	90
FAR1 40 kreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++ + k+ ++ +r r+e r++Ckak+ v ++ d+k++v+++++eHnH ++ Cse_sc006165.1_g060.1 52 TKKVKVKEfdslkdncdAKAVKRIRSEFRINCKAKIYVIRS-DEKYNVKNFVEEHNHGFF 110 44444444444444444566778999**********999.9************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MELPDQYSRI GPDLSVHFSS TNAVEETAIV TFVAAAVTFA VAAALSEIKE GTKKVKVKEF 60 DSLKDNCDAK AVKRIRSEFR INCKAKIYVI RSDEKYNVKN FVEEHNHGFF TAEDRHLQRY 120 HRFMSLAHQY FAIKASNLNV GPCISSNFIA ELLGGYENVS ATKIDFKNLS RDIYNYIGKY 180 DAQMIIDKFS TLKERDENFT FEFKTNTDGQ LSCLFWSDDT SKRNYEAFGE LLSFDATFKT 240 NMYKMVFVPF TGVDNHKKCV IFAAGLLSKE NIGSTICEEG GFKKHATRIY FYASIGYQLL 300 GSAASTRSNA TAGLDQQRNN QRVLDNNSRI TRPSLKTKHL VEQHAAEFYT LEAFYVVQAE 360 IVASIDSCTG SMKNLGFVKD NDKEWFGEFK VVYDEETRSV NCSCLHFERR GLLCRHAFYT 420 LRAYGISKIP KQYLLRHWKK EAVVLPPIGS SFKANGF

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MELPDQYSRI GPDLSVHFSS TNAVEETAIV TFVAAAVTFA VAAALSEIKE GTKKVKVKEF  60
DSLKDNCDAK AVKRIRSEFR INCKAKIYVI RSDEKYNVKN FVEEHNHGFF TAEDRHLQRY  120
HRFMSLAHQY FAIKASNLNV GPCISSNFIA ELLGGYENVS ATKIDFKNLS RDIYNYIGKY  180
DAQMIIDKFS TLKERDENFT FEFKTNTDGQ LSCLFWSDDT SKRNYEAFGE LLSFDATFKT  240
NMYKMVFVPF TGVDNHKKCV IFAAGLLSKE NIGSTICEEG GFKKHATRIY FYASIGYQLL  300
GSAASTRSNA TAGLDQQRNN QRVLDNNSRI TRPSLKTKHL VEQHAAEFYT LEAFYVVQAE  360
IVASIDSCTG SMKNLGFVKD NDKEWFGEFK VVYDEETRSV NCSCLHFERR GLLCRHAFYT  420
LRAYGISKIP KQYLLRHWKK EAVVLPPIGS SFKANGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-25	FAR1 family protein