PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006061.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 684aa MW: 74382.1 Da PI: 4.9076

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006061.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	296	316	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Cse_sc006061.1_g050.1 296 PCPDFRK-GACRRGDMCEYAHG 316 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MSQLSVETGD TSATLLEHAA NNDIEGFTLL IESDPSLIDE VGLWYGRQKG SKQMVLEHRT 60 PLMVAAMYGS IDVLKLILSK SKDNINRLCG VDKTTALHCA ASSGSLDVVE VVKMLLDAGA 120 DPNLIDVNGD RPVDVVVVSP KFPDMKKTLK ELLGPGVEVP VLNPDFGADG EMPALNSDHG 180 ADGEMPLLNS DADGEIPVMD PDLNPPSPEN GSPENGSPGS PRNLTFNDTK REYPVDPSLP 240 DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF 300 RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCNR RVCFFAHTQE ELRPLFVSTG 360 SAVPSPRSTA SGPTALDFAA AMSMMPGAGP GGISSFTPPM SPSGNGMSSM NWAQPNVPSL 420 HLPGSSLQSS RLRSSLNARD MPSDQELNLQ LLNELSRQQR SILTPTKLDD IFAAESSSPR 480 FSDQSVFSPR HNASVFNQFQ QQQSMLSPIN TNFSPKSGPF SVQSPGRMSP RSVDPISPMS 540 SRVSMLAREN QQQFRSLSSR ELGSRSGSIM GGAGEGVDPW SQWGPGNEKA DWGVNPDEFG 600 KLRRSSSFEI NGGNNGEEPD LSWVQSLVKE TPHEMKEKVG AYGGGSSSVG DVGGEGSNTQ 660 IEQVDQSALS AWIEQMQLDQ LVAQ

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MSQLSVETGD TSATLLEHAA NNDIEGFTLL IESDPSLIDE VGLWYGRQKG SKQMVLEHRT  60
PLMVAAMYGS IDVLKLILSK SKDNINRLCG VDKTTALHCA ASSGSLDVVE VVKMLLDAGA  120
DPNLIDVNGD RPVDVVVVSP KFPDMKKTLK ELLGPGVEVP VLNPDFGADG EMPALNSDHG  180
ADGEMPLLNS DADGEIPVMD PDLNPPSPEN GSPENGSPGS PRNLTFNDTK REYPVDPSLP  240
DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF  300
RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCNR RVCFFAHTQE ELRPLFVSTG  360
SAVPSPRSTA SGPTALDFAA AMSMMPGAGP GGISSFTPPM SPSGNGMSSM NWAQPNVPSL  420
HLPGSSLQSS RLRSSLNARD MPSDQELNLQ LLNELSRQQR SILTPTKLDD IFAAESSSPR  480
FSDQSVFSPR HNASVFNQFQ QQQSMLSPIN TNFSPKSGPF SVQSPGRMSP RSVDPISPMS  540
SRVSMLAREN QQQFRSLSSR ELGSRSGSIM GGAGEGVDPW SQWGPGNEKA DWGVNPDEFG  600
KLRRSSSFEI NGGNNGEEPD LSWVQSLVKE TPHEMKEKVG AYGGGSSSVG DVGGEGSNTQ  660
IEQVDQSALS AWIEQMQLDQ LVAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein