PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005953.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 268aa    MW: 31263.2 Da    PI: 5.8185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005953.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53e-132078148
                           TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+ +Ed++l+ +++++  +           +W+  +r  g+ R++k+c++rw +yl
  Cse_sc005953.1_g030.1 20 KGAWSVDEDQKLITYINRYDQKlityinrygiwNWSQMPRFAGLSRSGKSCRLRWMNYL 78
                           79*******************************************************97 PP
2Myb_DNA-binding51.91.7e-1684129148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g +++eE+e+++  + qlG++ W++Ia++++ gR+++++k++w+++l
  Cse_sc005953.1_g030.1  84 KGHFSEEEEEIILVSHSQLGNR-WSAIASRLP-GRSDNDVKNHWHSHL 129
                            689*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
LELNYINKYL EGEMSTDRKK GAWSVDEDQK LITYINRYDQ KLITYINRYG IWNWSQMPRF  60
AGLSRSGKSC RLRWMNYLRP NVKKGHFSEE EEEIILVSHS QLGNRWSAIA SRLPGRSDND  120
VKNHWHSHLK KRASEQNLVC GTTKENNVNS LPTFETENIE DIQQPANHID DSFESHFSFE  180
EHNFTSSSST ATSVDHIPNY HDTGSPGTID DLRYFWDQLC PLENLEHINN HMDHVTSAHA  240
FEDSNNYLGS YDSFYNNDYN SSIFHCPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.13e-43MYB family protein