PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005917.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 364aa MW: 40225.5 Da PI: 5.9041

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005917.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.5	2.4e-30	65	148	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++lk+plW+evs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++ + +t+++fdql+ Cse_sc005917.1_g020.1 65 RWPRQETLALLKIRSDMDVAFRDSSLKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTSK--ADGKTYRFFDQLQ 148 8******************************************************************96..66678****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MMLQGAPPGL TNNPGDSPAS TQPHDTAPTV SSGGGAELAG SGGSGFSEDE RGRIDDGGRN 60 SGGNRWPRQE TLALLKIRSD MDVAFRDSSL KGPLWDEVSR KLAELGYHRS AKKCKEKFEN 120 VYKYHKRTKE GRTSKADGKT YRFFDQLQAL EGSPATVMSQ HQHQHQQHQQ SPSTQHQQHP 180 VVSKPVQVSP MPNTQVPSVV IPANVTNATG SHQNNVDPIS VAAPAVTMPA TMNINHVAGF 240 PFSQLNLSVS TNSSSSSTSS DDDVAPERRR NKKRKWKEFF GNAGAVQEPH RHQNPYQQQH 300 QHQHQQQQQH QQQQGKPNEP TGNEEQHNDD DDEYDDDEEE DDDDEEGGEY EIVPNKTSSM 360 AAVE

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MMLQGAPPGL TNNPGDSPAS TQPHDTAPTV SSGGGAELAG SGGSGFSEDE RGRIDDGGRN  60
SGGNRWPRQE TLALLKIRSD MDVAFRDSSL KGPLWDEVSR KLAELGYHRS AKKCKEKFEN  120
VYKYHKRTKE GRTSKADGKT YRFFDQLQAL EGSPATVMSQ HQHQHQQHQQ SPSTQHQQHP  180
VVSKPVQVSP MPNTQVPSVV IPANVTNATG SHQNNVDPIS VAAPAVTMPA TMNINHVAGF  240
PFSQLNLSVS TNSSSSSTSS DDDVAPERRR NKKRKWKEFF GNAGAVQEPH RHQNPYQQQH  300
QHQHQQQQQH QQQQGKPNEP TGNEEQHNDD DDEYDDDEEE DDDDEEGGEY EIVPNKTSSM  360
AAVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	275	RRNKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	8e-51	Trihelix family protein