PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005915.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 323aa MW: 35080.1 Da PI: 5.9643

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005915.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.3	1.3e-07	10	41	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++ ++l+C+ ++ +lC C +++H+ Cse_sc005915.1_g010.1 10 LCDSCKTTSASLYCKADSAYLCIPCDTTIHHA 41 6****99******************744 PP
2	zf-B_box	25.6	2.6e-08	51	94	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 + C+ +e+ +++ C+ + lC+dC +H+ H++v Cse_sc005915.1_g010.1 51 VWLCDVCEHAPARVTCKADAAALCADCDRDIHEVnplarrHERV 94 679*****************************446666678776 PP
3	CCT	70.3	4.9e-24	262	305	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Cse_sc005915.1_g010.1 262 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 305 9****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MPSPTLTTLL CDSCKTTSAS LYCKADSAYL CIPCDTTIHH ANKLASRHAR VWLCDVCEHA 60 PARVTCKADA AALCADCDRD IHEVNPLARR HERVAVVEFY DSVEVAREER EARECEFGFG 120 GFDVNVAAEE EAASWLRCGD GDEVVGVKKG GGGDDVAGKG GGGYGLQSDG VVPVGGGGYD 180 DVAVVDVVEG LPAYDVEYGG VGNKPFMYNF TAQSISQSVS SSSLEVGVVP DHNTTLADVS 240 NHHHHNQSST EVYPTPLMGL DREARVLRYK EKRKNRKFEK TIRYASRKAY AETRPRIKGR 300 FAKRTTDESV ISQDSSYGVV PSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.2	3e-35	DBB family protein