PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc005914.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22478.4 Da PI: 10.1132 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.8 | 1.2e-17 | 15 | 59 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kri+n++ r vt skR +g++KKA EL +LC++ +a+i f gk Cse_sc005914.1_g010.1 15 KRINNERERAVTMSKRHKGLFKKACELATLCGVHIAIIFFTIGGK 59 79************************************9976665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MAKLPKRGRK KIEIKRINNE RERAVTMSKR HKGLFKKACE LATLCGVHIA IIFFTIGGKS 60 LSFGSPSIHS ILNKFLKINE VDEQPEYFIT QLANCNESRL QELNKHYNEI SEKLINERKR 120 GQILEKTPKG LFGGKAFEEC ISGLVIEKIV KLKFHLMELE KILKGNRESR CVCSSSNDDN 180 KVDLSKMEVP KDYLKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-20 | M-type_MADS family protein |