PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005841.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family RAV
Protein Properties Length: 340aa    MW: 37976.9 Da    PI: 9.5995
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005841.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.2e-1253101155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s++kGV   + +grW A+I++      ++r++lg+f  + eAaka++ a ++++g
  Cse_sc005841.1_g010.1  53 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEHEAAKAYDTAVQRFRG 101
                            79****9888.8*********3.....5**********99************998 PP
2B398.93.2e-31178275194
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed   ++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++
  Cse_sc005841.1_g010.1 178 FEKTVTPSDVGKLNRLVIPKQHAEKHfplqSGSTSKGVLLHFEDVGMKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQR 265
                            99****************************888899***************************************************8 PP

                            -SSSEE..EE CS
                     B3  85 dgrsefelvv 94 
                            +   +++l++
  Cse_sc005841.1_g010.1 266 STGPDKQLYI 275
                            7556665655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MEGSSTDDQS TTTETTSTVV APVTTPQLIG SGGSMVLDME GGLEAESRKL PSSKFKGVVP  60
QPNGRWGAQI YEKHQRVWLG TFNEEHEAAK AYDTAVQRFR GRDAVTNFKQ LSLDNEEASL  120
EASFLNSHSK AEIVDMLRKH TYNDEFEQSK RSCSLKTSPF GDGFRSGHQL VNAREQLFEK  180
TVTPSDVGKL NRLVIPKQHA EKHFPLQSGS TSKGVLLHFE DVGMKVWRFR YSYWNSSQSY  240
VLTKGWSRFV KEKNLKAGDI VSFQRSTGPD KQLYIDFKTK AASGTTNLIP VGLAQPVQPV  300
QMFRLFGVDI FSASNGKRSN IELELLGLGN CKKQRMIDPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-138RAV family protein