PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005834.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 287aa    MW: 32492.1 Da    PI: 5.1048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005834.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +l++ +   G  +W+++++  g++R++k+c++rw +yl
  Cse_sc005834.1_g020.1 14 KGPWTAEEDNKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding513.4e-1672111647
                            HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            + E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Cse_sc005834.1_g020.1  72 ESEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                            78***************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGRQPCCDKL GVKKGPWTAE EDNKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NESEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKRG  120
IDPVTHEPLQ KESQDTKTTS CPQDHSSQSE HNSHSSPVES ANATGSSDEN SSASPPENCS  180
ILGHEPEKLF ESISEDEKLL SLCEDEKLLS YLLGDDEPPL VDTTTWELPN NAHNFTNYTG  240
SFNSWDDCAT WLLDCQDFGV HDFGLDCFNQ VEMSILDTLE NDNKQQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.15e-94MYB family protein