PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005798.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family TCP
Protein Properties Length: 299aa    MW: 33758.9 Da    PI: 8.8717
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005798.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.92.5e-401032512136
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas..... 83 
                            + kkd hski T++g+RdRRvRls+e+ ++fF Lqd LGfdk+skt++WL+ ++k aikel+++ + s+s++ +++s+ +  +     
  Cse_sc005798.1_g020.1 103 TSKKDGHSKINTAQGPRDRRVRLSIEISRKFFCLQDLLGFDKASKTLDWLFSKSKNAIKELVEDINHSSSSTvTDQSKLNFLEaikgg 190
                            579*************************************************************444443332222222222223333 PP

                    TCP  84 nsssg...........kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                            +   +               +  k+  ++++a  + nla+ +sra arararertrekm++k+ +
  Cse_sc005798.1_g020.1 191 S---DedkekkksaikYGDVKR-KKMTPKSKAVVQENLARdQSRAMARARARERTREKMNTKTAD 251
                            0...033344445554222222.333444444445788888********************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MFSSNPFPEF LPSPNVPLPS NLYFDLEKDY INTGPFISTD GYVHGYNALT PLPFMEDLNT  60
ISQDFLSQQH QFSDVQRFQS PEDVDDLLGL VISSSKSKKK TDTSKKDGHS KINTAQGPRD  120
RRVRLSIEIS RKFFCLQDLL GFDKASKTLD WLFSKSKNAI KELVEDINHS SSSTVTDQSK  180
LNFLEAIKGG SDEDKEKKKS AIKYGDVKRK KMTPKSKAVV QENLARDQSR AMARARARER  240
TREKMNTKTA DDDLKTLLHD DFDYHNLERN AGEINRAILT ASSTDHFWAG VNGGPGLML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197211KKKSAIKYGDVKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-24TCP family protein