PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005681.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 637aa MW: 71724 Da PI: 6.1711

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005681.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.9e-08	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg Cse_sc005681.1_g030.1 279 PCPEFRK-GTCRLGDNCEYAHG 299 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MKRIESTYSN QPHKEMCTSD MVADNRTVGN ISVLLELSAA DDVEGFKSIV EQDGLDVDLN 60 ASGLWYGRAL GLKKMSLEER TPLMIASMFG SKNVLKFMIG LERVDVNKCC GSDNATALHM 120 AVAGGSSACV EVVKMLIDAN ADTSCLDVNG NRPVDLIPLV FGSSSNSRRK FLELMLNGYS 180 DNDERFVVSE LVDSHIEEQK GTGLGSVSPI STKKEYPVDL SLPDMKNGIY NTDEFRMYTF 240 KIKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRL GDNCEYAHGI 300 FECWLHPAQY RTRLCKDEVG CNRKVCFFAH KREELRPLHP STGSAVLSPR SLSDLSLISP 360 FSLGSPSIMI PPSSTPPLTP GGLSPRGGAM WSNQSSPIMK GLSSRFRTTP SRQDLDLDHY 420 RQQQLMDDFN KSPFMGDYIE EYDMGGSRIN PLNQNMNYSS GLPSSPLRLS SSPSFGPNQM 480 MNARSAAFAK RSQSFIDRGT VNRQSNDELN KLRKSASFGV RRSSDSITNN PEPDAHLFSQ 540 TNQPPGNNVS FDEEQQFAPW LEELYLEQEQ LRQKIGEKRD EDTHFREMVT LDMCMDMNKQ 600 EIKCWMWNHW TSIDWLASDA QILAMVLKIN STIPLWE

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MKRIESTYSN QPHKEMCTSD MVADNRTVGN ISVLLELSAA DDVEGFKSIV EQDGLDVDLN  60
ASGLWYGRAL GLKKMSLEER TPLMIASMFG SKNVLKFMIG LERVDVNKCC GSDNATALHM  120
AVAGGSSACV EVVKMLIDAN ADTSCLDVNG NRPVDLIPLV FGSSSNSRRK FLELMLNGYS  180
DNDERFVVSE LVDSHIEEQK GTGLGSVSPI STKKEYPVDL SLPDMKNGIY NTDEFRMYTF  240
KIKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRL GDNCEYAHGI  300
FECWLHPAQY RTRLCKDEVG CNRKVCFFAH KREELRPLHP STGSAVLSPR SLSDLSLISP  360
FSLGSPSIMI PPSSTPPLTP GGLSPRGGAM WSNQSSPIMK GLSSRFRTTP SRQDLDLDHY  420
RQQQLMDDFN KSPFMGDYIE EYDMGGSRIN PLNQNMNYSS GLPSSPLRLS SSPSFGPNQM  480
MNARSAAFAK RSQSFIDRGT VNRQSNDELN KLRKSASFGV RRSSDSITNN PEPDAHLFSQ  540
TNQPPGNNVS FDEEQQFAPW LEELYLEQEQ LRQKIGEKRD EDTHFREMVT LDMCMDMNKQ  600
EIKCWMWNHW TSIDWLASDA QILAMVLKIN STIPLWE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-141	C3H family protein