PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005633.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 511aa MW: 58630 Da PI: 7.7842

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005633.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.6	4.1e-29	87	172	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+ev++ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Cse_sc005633.1_g050.1 87 RWPRQETLTLLEVRSRLDSKFKEANQKGPLWDEVARLMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 172 8***********************************999*************************98..55667*****85 PP
2	trihelix	54.2	3.9e-17	372	447	2	75
trihelix 2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 W ++e+ Li++r++me+r+++g ++ lWee+++km+ +g++r+++ Ck kw+++n ++k+ + + +s+s Cse_sc005633.1_g050.1 372 WGENEISRLIQLRTSMETRFEQGGyMDELLWEEIASKMACHGYNRNSVACKTKWDSINEFLMRTKKPKDNTrSSNS 447 *******************9652889****************************977777776665413333 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MEEQYGITDL THYMNGRPMF TAIPQTQPHD LQYEMVSLGG GGGGGMMFRS DSTTGTGSTT 60 ASLSAGGGLE MEIGGGLDKE IGGGNGRWPR QETLTLLEVR SRLDSKFKEA NQKGPLWDEV 120 ARLMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGDTSTS 180 LHPNSNPNQS SFLDSHNLNT ETSTFLAHQH PKNSYQPTSS RLCDSPSLSN NSSAFETSSS 240 GYSNPNAFME NTDSVDRTNS KNRLGTRGWK MKIKVFIDAQ MKKIMEKQEE WMDKMMKSIE 300 QKEQERVLRE EQWRKEEVAR FEKEHKFWAN ERAWMESRDS ALMEALQKLN GKESDSKSPH 360 DQNLHHNNGN SWGENEISRL IQLRTSMETR FEQGGYMDEL LWEEIASKMA CHGYNRNSVA 420 CKTKWDSINE FLMRTKKPKD NTRSSNSYSQ NNNYESLPHM FHHQVGSYGQ ANERLVASNN 480 QHNNASYRFL MGNPQNMWDG YGMKLSKGED H

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MEEQYGITDL THYMNGRPMF TAIPQTQPHD LQYEMVSLGG GGGGGMMFRS DSTTGTGSTT  60
ASLSAGGGLE MEIGGGLDKE IGGGNGRWPR QETLTLLEVR SRLDSKFKEA NQKGPLWDEV  120
ARLMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGDTSTS  180
LHPNSNPNQS SFLDSHNLNT ETSTFLAHQH PKNSYQPTSS RLCDSPSLSN NSSAFETSSS  240
GYSNPNAFME NTDSVDRTNS KNRLGTRGWK MKIKVFIDAQ MKKIMEKQEE WMDKMMKSIE  300
QKEQERVLRE EQWRKEEVAR FEKEHKFWAN ERAWMESRDS ALMEALQKLN GKESDSKSPH  360
DQNLHHNNGN SWGENEISRL IQLRTSMETR FEQGGYMDEL LWEEIASKMA CHGYNRNSVA  420
CKTKWDSINE FLMRTKKPKD NTRSSNSYSQ NNNYESLPHM FHHQVGSYGQ ANERLVASNN  480
QHNNASYRFL MGNPQNMWDG YGMKLSKGED H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-110	Trihelix family protein