PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005450.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 526aa    MW: 58139.7 Da    PI: 8.1367
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005450.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.55.2e-931525252373
                   GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             +l+ ++Aea+s+g+ ela +l++rl++l  +s  g+p q++ + ++ AL arl           +p++t e  s+e++++++l+++ 
  Cse_sc005450.1_g020.1 152 NQLVCDAAEAISDGKSELAVELITRLNKLccSSACGNPEQKVGFQMATALLARLRV---------APTAT-ELYSKEHIMSTQLLYDK 229
                            578899***********************9788889******************97.........33333.34599************ PP

                   GRAS  88 sPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLa.sRpeg...ppslRiTgvgspesgskeeleetgerLa 166
                            sP++k+++++aN+ I++ ++g+       +H++Dfdi++GlQ++ Ll+++a +R+++   p sl++T++++  +g  e+l+ +g+ L+
  Cse_sc005450.1_g020.1 230 SPCFKLCFMAANSVIMKTFSGSdsgsgMNIHVVDFDIGHGLQYVYLLHEIAaARKGDarvPSSLKVTTFKDFGNGGVERLKLVGDGLK 317
                            *********************988888889********************967774444477*********9999************* PP

                   GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                            ++A++lgv f +nvl + +l  ++ e+L v +++ laVn++++l +l+desv++e+ rdevL+ vkslsP vv+v+eqe++ n++sF 
  Cse_sc005450.1_g020.1 318 SLANKLGVLFYYNVL-EFKLPVISRERLMVGNDDFLAVNFAFKLSKLPDESVTTENLRDEVLRRVKSLSPSVVTVAEQELNANTASFT 404
                            *************95.779********************************************************************* PP

                   GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                             r+ +a+ yy ++ ds++a++p+es +r+k+E+  l+r+i n vaceg++r+er+e l+kWr+r+++aGF + ++s+ ++++ +  l+
  Cse_sc005450.1_g020.1 405 SRVNDAFGYYKTFIDSFDATIPKESADRVKIEEG-LSRRIANSVACEGRDRVERCEVLGKWRARMRMAGFDSKRVSQLTVESLRGRLN 491
                            **********************************.***********************************************999887 PP

                   GRAS 343 kvk..sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                                 + g++v+ee+   v +gW +r+L++vSaW
  Cse_sc005450.1_g020.1 492 SGTrgNPGFTVKEEDTGGVsFGWLGRTLTVVSAW 525
                            65547899****88777666************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    
MSSGFSGGFK RSLAEFQQHQ LYLRNVRPRS YSHISPEYSS ESNISSVSRR DGLFYNGVMV  60
SNYQINNFIR KNDNENEKNK MMKNRLQEIE KELLLDEDEN DDVSGVSDAS AWSESIQNLL  120
INPVHVKKPG SPSPTTSSSS SCASSSSNVS INQLVCDAAE AISDGKSELA VELITRLNKL  180
CCSSACGNPE QKVGFQMATA LLARLRVAPT ATELYSKEHI MSTQLLYDKS PCFKLCFMAA  240
NSVIMKTFSG SDSGSGMNIH VVDFDIGHGL QYVYLLHEIA AARKGDARVP SSLKVTTFKD  300
FGNGGVERLK LVGDGLKSLA NKLGVLFYYN VLEFKLPVIS RERLMVGNDD FLAVNFAFKL  360
SKLPDESVTT ENLRDEVLRR VKSLSPSVVT VAEQELNANT ASFTSRVNDA FGYYKTFIDS  420
FDATIPKESA DRVKIEEGLS RRIANSVACE GRDRVERCEV LGKWRARMRM AGFDSKRVSQ  480
LTVESLRGRL NSGTRGNPGF TVKEEDTGGV SFGWLGRTLT VVSAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-112GRAS family protein