PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005264.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 409aa MW: 43256.9 Da PI: 5.8652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005264.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.5e-12	226	271	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cse_sc005264.1_g020.1 226 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 271 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MWCYGDRGVF DVMSEQPPKE YPFYVEGDFV YNILNFLHNF PEKKMQESQM SLQDLQNNDT 60 NNNTTFDPTA THDDFLDQML SGLQTNVTWP DISNGGGQNK ASLPWDVDHF DDQSAFLSSK 120 LRQHQITGGA RTPVSPIGEN NNNAIQNLFH GFTGSLATSQ GQQFRNLPAQ NFGSPAAAVA 180 AAVMNQVQAG SVTAAGGGGG GGGGGGAPSQ PRQRVRARRG QATDPHSIAE RLRRERIAER 240 MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGASAGAA AGAANPMAAE 300 GGGDCGQRGG PGTGRSSNGT TSSSNNETMT VTENQVVKLM EEDMGSAMQY LQGKGLCLMP 360 ISLATAISTA TCHPSSTRTN HLGGGEGGPT SPNMSVLTVQ SANGVKDSP

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MWCYGDRGVF DVMSEQPPKE YPFYVEGDFV YNILNFLHNF PEKKMQESQM SLQDLQNNDT  60
NNNTTFDPTA THDDFLDQML SGLQTNVTWP DISNGGGQNK ASLPWDVDHF DDQSAFLSSK  120
LRQHQITGGA RTPVSPIGEN NNNAIQNLFH GFTGSLATSQ GQQFRNLPAQ NFGSPAAAVA  180
AAVMNQVQAG SVTAAGGGGG GGGGGGAPSQ PRQRVRARRG QATDPHSIAE RLRRERIAER  240
MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGASAGAA AGAANPMAAE  300
GGGDCGQRGG PGTGRSSNGT TSSSNNETMT VTENQVVKLM EEDMGSAMQY LQGKGLCLMP  360
ISLATAISTA TCHPSSTRTN HLGGGEGGPT SPNMSVLTVQ SANGVKDSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	236	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-59	bHLH family protein