PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005250.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 999aa MW: 111898 Da PI: 8.1309

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005250.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.3	1.9e-08	210	264	22	76
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 +rgk ++ + +ev++++++ g++r +k+ kw+n+ ++++k+ e+e++++ e+ Cse_sc005250.1_g010.1 210 GRGKTRAEKDREVAEFLQRNGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 264 4788899999**************************************9965544 PP

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence
MSDNKGDKSK KQQKHSTPSP KDNTQETLDD ITPSVTVATT VAAPTFLSPP PPQQPQPSSQ 60 LYLSTELVNP KRPRYASTTG QWKLLPSPSQ KQAVTTTAEK ILSPAVAAAS SSDTASSPSH 120 SPRLSVSGQE TSKSEGEQQF SQHQLRKGKY VSPVWKPNEM LWLARAWRVQ YQGGSGLSVG 180 LGDRVSGSDR ASDPTPITST PAPVPSQLQG RGKTRAEKDR EVAEFLQRNG VNRDAKTAGT 240 KWDNMLGEFR KVYEWERGGE REQIGKSYFR LSPYERKLHR LPASFDEEVF EELASFMGSR 300 MRTPPNSICR GTSPLFLTSG GDQDSRLALV EAKSFPPPPF KDDDLPFSTS VGRGGRHMVM 360 SGTGEGYFHG ARGSLLGIEG SPMDVTGGVG QYETSSSSTL KELRRIGKVR MVWEELVSLW 420 AEDGEHHRGR IKVQGTSFLN ADELTFLDDA MVACTLEAFE DANSPLKGFS VDRFLPGQQL 480 KVFGRRKSTH HPSRSTGLST DRNQAPLEPP IRSIPPWEFQ DPTEYYLGCL RVPPPSLPSL 540 IDLPWYLQEP PPEELRFPLR KDLYRDLPPG KELFFTTSSE LLDCRSFGLD ILSPIARSNP 600 TLTITIRESF IGLWDDCINR VISKFSNIDM VFIRKPSLSV LANSGIQDQW PNVTGFVRNF 660 CLWRGEETDR LREDNNLDPS SLMVQKLLWS YMDLPYILGY YAVGYIVTFC ALSRTHDRII 720 RTDLHTVDLS TPGDRIKALV PCWRIAGLLS LLADRCANIQ QINKPFPYSD FERIDLGNNN 780 IIELTPNYMT RVFSSKRKWV MVKEIYDFLD HRIPHSEFIF QSSEKDLSLS FKPRGCKLKL 840 SNFQQLVEAL KHVTKALVAL HDLSFMHRDL GWDKVMRRSD RENEWFIIGF DEAASAPQIY 900 PPQHDVGAGV APMSQIFGTS VGGRHAPEMK GRGMHGVKVD VWGVGQMLKT CGLVGLPKAL 960 RELQNRCLDQ NPEQRPTAAD CYHHLLQLQS SMTSAAGDY

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence

MSDNKGDKSK KQQKHSTPSP KDNTQETLDD ITPSVTVATT VAAPTFLSPP PPQQPQPSSQ  60
LYLSTELVNP KRPRYASTTG QWKLLPSPSQ KQAVTTTAEK ILSPAVAAAS SSDTASSPSH  120
SPRLSVSGQE TSKSEGEQQF SQHQLRKGKY VSPVWKPNEM LWLARAWRVQ YQGGSGLSVG  180
LGDRVSGSDR ASDPTPITST PAPVPSQLQG RGKTRAEKDR EVAEFLQRNG VNRDAKTAGT  240
KWDNMLGEFR KVYEWERGGE REQIGKSYFR LSPYERKLHR LPASFDEEVF EELASFMGSR  300
MRTPPNSICR GTSPLFLTSG GDQDSRLALV EAKSFPPPPF KDDDLPFSTS VGRGGRHMVM  360
SGTGEGYFHG ARGSLLGIEG SPMDVTGGVG QYETSSSSTL KELRRIGKVR MVWEELVSLW  420
AEDGEHHRGR IKVQGTSFLN ADELTFLDDA MVACTLEAFE DANSPLKGFS VDRFLPGQQL  480
KVFGRRKSTH HPSRSTGLST DRNQAPLEPP IRSIPPWEFQ DPTEYYLGCL RVPPPSLPSL  540
IDLPWYLQEP PPEELRFPLR KDLYRDLPPG KELFFTTSSE LLDCRSFGLD ILSPIARSNP  600
TLTITIRESF IGLWDDCINR VISKFSNIDM VFIRKPSLSV LANSGIQDQW PNVTGFVRNF  660
CLWRGEETDR LREDNNLDPS SLMVQKLLWS YMDLPYILGY YAVGYIVTFC ALSRTHDRII  720
RTDLHTVDLS TPGDRIKALV PCWRIAGLLS LLADRCANIQ QINKPFPYSD FERIDLGNNN  780
IIELTPNYMT RVFSSKRKWV MVKEIYDFLD HRIPHSEFIF QSSEKDLSLS FKPRGCKLKL  840
SNFQQLVEAL KHVTKALVAL HDLSFMHRDL GWDKVMRRSD RENEWFIIGF DEAASAPQIY  900
PPQHDVGAGV APMSQIFGTS VGGRHAPEMK GRGMHGVKVD VWGVGQMLKT CGLVGLPKAL  960
RELQNRCLDQ NPEQRPTAAD CYHHLLQLQS SMTSAAGDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-07	Trihelix family protein