PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005117.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 412aa MW: 46259.6 Da PI: 6.238

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005117.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	240	284	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N++f Lr+++P K++Ka+ L Av YI++L Cse_sc005117.1_g030.1 240 HVEAERQRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYINEL 284 889********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MELLNSTTMA QSSLQTRLKF ILQNRPERWL YAIFWQASKG TDDRHVLEWA DGYFPETNHV 60 FGLDDVSDTQ WLIMSSLGRC FPAGHDVVGQ CFGSRSCVWL AGDIELGKYD SKRCEEVRVH 120 GIKSLVCIPT NNGVVELGCC DVVQQDCGLI ELTKSVFDPY TLSNINFHNL VDECEFPNQG 180 EGHEEVTSTK KMKMSSSDSD PLEINSSSSL TTKNTCTPKR KGRRVKGTIA QPEVLAPGYH 240 VEAERQRREK LNHRFYALRS VVPYVSKMDK ASLLADAVTY INELKSKIQT LENNKGSESS 300 VIRPRNDNQL NINQCNHVHD QGNTGYSTAN QVEVEVKLLE SEAMIRVPSA EVDHPACKLM 360 DALRSLNLKV HYASVSCVKD LMLQDVIVKV PNGFIGEEDT LRLVILNKMC LD

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MELLNSTTMA QSSLQTRLKF ILQNRPERWL YAIFWQASKG TDDRHVLEWA DGYFPETNHV  60
FGLDDVSDTQ WLIMSSLGRC FPAGHDVVGQ CFGSRSCVWL AGDIELGKYD SKRCEEVRVH  120
GIKSLVCIPT NNGVVELGCC DVVQQDCGLI ELTKSVFDPY TLSNINFHNL VDECEFPNQG  180
EGHEEVTSTK KMKMSSSDSD PLEINSSSSL TTKNTCTPKR KGRRVKGTIA QPEVLAPGYH  240
VEAERQRREK LNHRFYALRS VVPYVSKMDK ASLLADAVTY INELKSKIQT LENNKGSESS  300
VIRPRNDNQL NINQCNHVHD QGNTGYSTAN QVEVEVKLLE SEAMIRVPSA EVDHPACKLM  360
DALRSLNLKV HYASVSCVKD LMLQDVIVKV PNGFIGEEDT LRLVILNKMC LD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-56	bHLH family protein