PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005117.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 418aa MW: 46916.3 Da PI: 5.8728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005117.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	246	290	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N++f Lr+++P K++Ka+ L Av YI++L Cse_sc005117.1_g010.1 246 HVEAERQRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYINEL 290 889********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MELLNSTTMA QSSLQTRLKF ILQNRTERWL YSIFWQASKG TDDRLVLEWA DGYFPETNDV 60 FGLDDVSDTQ WLIMSSIGMC FPAGHDVVGQ CFGSRSCVWL AGDIELGKYD SKRCEEVRLH 120 GIKSLVCIPT NNGVVELGCC DVVQQDCGLI KLTKSVFDPN SLSNINFHNL VDECEFPNQG 180 LQNQVGEGQE EVTSTKKMKM SSSDSDPLEI NSSSSLTTKN TCTAKRKGRR VKDTIAQPEV 240 LAPGYHVEAE RQRREKLNHR FYALRSVVPY VSKMDKASLL ADAVTYINEL KSKIQTLENN 300 KGSESSVIRP RNDNQLNINQ CNHVHDQGTT GYSTANQVEV EVKLLESEAM IRVQSAEVDH 360 PACKLMDALR SLNLKVHYAS VSCVKDLMLQ DVIVKVPNGF INEEDTLRFA ILKKMCLD

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MELLNSTTMA QSSLQTRLKF ILQNRTERWL YSIFWQASKG TDDRLVLEWA DGYFPETNDV  60
FGLDDVSDTQ WLIMSSIGMC FPAGHDVVGQ CFGSRSCVWL AGDIELGKYD SKRCEEVRLH  120
GIKSLVCIPT NNGVVELGCC DVVQQDCGLI KLTKSVFDPN SLSNINFHNL VDECEFPNQG  180
LQNQVGEGQE EVTSTKKMKM SSSDSDPLEI NSSSSLTTKN TCTAKRKGRR VKDTIAQPEV  240
LAPGYHVEAE RQRREKLNHR FYALRSVVPY VSKMDKASLL ADAVTYINEL KSKIQTLENN  300
KGSESSVIRP RNDNQLNINQ CNHVHDQGTT GYSTANQVEV EVKLLESEAM IRVQSAEVDH  360
PACKLMDALR SLNLKVHYAS VSCVKDLMLQ DVIVKVPNGF INEEDTLRFA ILKKMCLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-56	bHLH family protein