PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005028.1_g100.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 812aa MW: 91694.3 Da PI: 8.8318

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005028.1_g100.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	25.2	3.2e-08	556	610	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLg.........vclTvLKriCRqyGIkRWPhRk 48 +++++e ++k+ +pi +AAk+L + ++LKr CR + ++ WP k Cse_sc005028.1_g100.1 556 DNLTMEAVRKHLGKPIDEAAKSLHgksfklvyyFSRSTLKRFCRDNKMSSWPLPK 610 79**************************************************765 PP

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence
MAQMKDMPRN KFSLDPPAPV AAGDSRYLTR LYVSGKGEQP EERSRSESSQ SAIPSGFELR 60 ADNTDPRDNI RAALKLLTFR EQNVLVQFWS PRVVGKHHQL TTVDQPYGVG AIDDRLYMYR 120 KDSVCNFYVV DKDDEEEEFL GPPARVFSRG LPEWTSDLTN YRPKHFPQQE CAIHCDLHGY 180 LALPVFEATT GLCVGVIELL ASLKYTAFAY EVQQFQRVLK SVNLTTKHAL DSPTLNVHNE 240 RRDDLEKIFS ILKVVCETHR LPLAQTWAMS PLSSFTSHEQ MLKKSCNSFN TRCVGKSCMS 300 TAALPFYVQD LGLWRFREVC RERHLDKSCG SVGRALLSHG SSFCEDVTKL SEEEYPLGSY 360 ARMSGLTSCF AIFLHSVESN DGYVLEFFLS LNIEDGRYVQ NLVQTLKENT KMVSGIVLGD 420 KSPTQVVGPP TEATSLHLDT DPQSTIIAST TTTKNKALEI VSSDSESFVA DKARTDFTHS 480 GKQLSPKQEM ITNNDGGTIK SSEIVVQDDV KRDNINAVDA RNNDDASDNH ISTLLRITDV 540 GENSNRVKRG RKRKIDNLTM EAVRKHLGKP IDEAAKSLHG KSFKLVYYFS RSTLKRFCRD 600 NKMSSWPLPK HNKKTAHVTD SKLAQSSKSS NIRFSLFAVV FLLVRVKRWS CSSKRHGLSG 660 KWWVCGKHSY IPSKSDSIYQ VARLMVYLNR WKNKKSTKHA IQKRDQLAVC ESTEKPEHKS 720 DAVSDGRKVT VKGAFGDDIL KFQFPISSGL VELEKEVEQR IKLKGKKLYL KYLDEDDDLI 780 LLACDADLRD LLRYSASNNT TTIKIIITLV NE

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence

MAQMKDMPRN KFSLDPPAPV AAGDSRYLTR LYVSGKGEQP EERSRSESSQ SAIPSGFELR  60
ADNTDPRDNI RAALKLLTFR EQNVLVQFWS PRVVGKHHQL TTVDQPYGVG AIDDRLYMYR  120
KDSVCNFYVV DKDDEEEEFL GPPARVFSRG LPEWTSDLTN YRPKHFPQQE CAIHCDLHGY  180
LALPVFEATT GLCVGVIELL ASLKYTAFAY EVQQFQRVLK SVNLTTKHAL DSPTLNVHNE  240
RRDDLEKIFS ILKVVCETHR LPLAQTWAMS PLSSFTSHEQ MLKKSCNSFN TRCVGKSCMS  300
TAALPFYVQD LGLWRFREVC RERHLDKSCG SVGRALLSHG SSFCEDVTKL SEEEYPLGSY  360
ARMSGLTSCF AIFLHSVESN DGYVLEFFLS LNIEDGRYVQ NLVQTLKENT KMVSGIVLGD  420
KSPTQVVGPP TEATSLHLDT DPQSTIIAST TTTKNKALEI VSSDSESFVA DKARTDFTHS  480
GKQLSPKQEM ITNNDGGTIK SSEIVVQDDV KRDNINAVDA RNNDDASDNH ISTLLRITDV  540
GENSNRVKRG RKRKIDNLTM EAVRKHLGKP IDEAAKSLHG KSFKLVYYFS RSTLKRFCRD  600
NKMSSWPLPK HNKKTAHVTD SKLAQSSKSS NIRFSLFAVV FLLVRVKRWS CSSKRHGLSG  660
KWWVCGKHSY IPSKSDSIYQ VARLMVYLNR WKNKKSTKHA IQKRDQLAVC ESTEKPEHKS  720
DAVSDGRKVT VKGAFGDDIL KFQFPISSGL VELEKEVEQR IKLKGKKLYL KYLDEDDDLI  780
LLACDADLRD LLRYSASNNT TTIKIIITLV NE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-80	Nin-like family protein