PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005028.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 745aa MW: 84701.5 Da PI: 8.1423

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005028.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	35.6	1.8e-11	539	584	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++++e+++++ pi +AAk+ g++ ++L r CR +G++ WP R Cse_sc005028.1_g090.1 539 DSLKMETVKQHVGRPIDEAAKSFGISRSTLTRFCRVNGLSSWPKRS 584 6899****************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MDSLRRSQSA DSAEREKSSC SGPLSVLSRD QITDLLWNKT SLKKPTIPFS DESRYLIPLW 60 VSENEYPREE LYQSVSSQSI ITCIEPKNEL FVPVHQKIEE KIRAALKLLN FREEHVLVQF 120 WSPRVVGKHQ LLTTTHQPFG LGVIDEGLLT YRKNSENNVC LVVKDDEEED SSPPARVFRR 180 GLPEWTSDLA NYIPKDFRQQ ECAIRCNLHG YLALPVFDST TGLCVGVIEL LMSSTNTTYA 240 FEAQQVHKAL KTVNLTSPQI FDSATPEVHN EWRQSELDKI MGILKTVCDI YNLPLAQTWA 300 VSPSTSFVSH DKIIEKSCSS FDTRCIGKVC LSTNALPFYV RDLRVWPFRE VCKEQHLDKF 360 RSFVARALLA RGSCYCQDVT QLSEEEYPLV HNARMSGLKS CFTIFLHSNE GNDDYIFEFY 420 LPSNIEDGSY LVQTLKQIIV DASGFELGDI SPIQFIGPPQ SIQISSTTTA NTMAAGMNSS 480 DSKSVFANFL KIDNKQGDIS NNYNLVASKT NDNGASHPIV IKNKTTDTIV KRRRKRKIDS 540 LKMETVKQHV GRPIDEAAKS FGISRSTLTR FCRVNGLSSW PKRSKKTTNL TNSKPSQELS 600 STQRFQQSSS PCKHIGVVVS VVIRVKRWSC SSKRHGFSGK WWICGQHIYI PYEPYIYQAA 660 QQMIVKATFK DDMIKFRFPI SSGRLSELEN QVAQRLDLEG KKLRVKYKDE QNELVLITRD 720 DDLHNLPEFL DSNINIKLFI DLACD

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MDSLRRSQSA DSAEREKSSC SGPLSVLSRD QITDLLWNKT SLKKPTIPFS DESRYLIPLW  60
VSENEYPREE LYQSVSSQSI ITCIEPKNEL FVPVHQKIEE KIRAALKLLN FREEHVLVQF  120
WSPRVVGKHQ LLTTTHQPFG LGVIDEGLLT YRKNSENNVC LVVKDDEEED SSPPARVFRR  180
GLPEWTSDLA NYIPKDFRQQ ECAIRCNLHG YLALPVFDST TGLCVGVIEL LMSSTNTTYA  240
FEAQQVHKAL KTVNLTSPQI FDSATPEVHN EWRQSELDKI MGILKTVCDI YNLPLAQTWA  300
VSPSTSFVSH DKIIEKSCSS FDTRCIGKVC LSTNALPFYV RDLRVWPFRE VCKEQHLDKF  360
RSFVARALLA RGSCYCQDVT QLSEEEYPLV HNARMSGLKS CFTIFLHSNE GNDDYIFEFY  420
LPSNIEDGSY LVQTLKQIIV DASGFELGDI SPIQFIGPPQ SIQISSTTTA NTMAAGMNSS  480
DSKSVFANFL KIDNKQGDIS NNYNLVASKT NDNGASHPIV IKNKTTDTIV KRRRKRKIDS  540
LKMETVKQHV GRPIDEAAKS FGISRSTLTR FCRVNGLSSW PKRSKKTTNL TNSKPSQELS  600
STQRFQQSSS PCKHIGVVVS VVIRVKRWSC SSKRHGFSGK WWICGQHIYI PYEPYIYQAA  660
QQMIVKATFK DDMIKFRFPI SSGRLSELEN QVAQRLDLEG KKLRVKYKDE QNELVLITRD  720
DDLHNLPEFL DSNINIKLFI DLACD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	531	537	KRRRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	3e-93	Nin-like family protein