PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005028.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 716aa MW: 81074.7 Da PI: 9.3646

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005028.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	34.3	4.8e-11	446	490	3	47
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 ++++++ ++k+ +pi +AAk+Lgv+ ++LKr CR + + WP Cse_sc005028.1_g040.1 446 DTLTMDAVKKHDGKPIDEAAKSLGVSRSTLKRFCRDNKMTSWPLP 490 68999*************************************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MNKKCILLKR RLPEWTPDVA NYLPKQFPQK ESAIRCYLHG YLALPVVDLF TSSCVGVLEI 60 LTSSKYISYA YEIQQIQSAL KVSSLLYFKT MYWVNLKPFI DFNGCQYTAN LITTQAFDGP 120 TIHVHDAHGQ NELEKIHNVL KFVCDTHNLP LTQTWATSPL TTFASHDQIL KKSCSSFHTR 180 CLGKVCMSTA ALPFYVLDLR MWSFRKACKE QHLDKSCAFV GRTLLSHGSC FCKDVTKLSQ 240 EEYPLVHYAR MSGLSSCFTI SLHSIESDND YVLEFFLPLH REDDSYVQNL VHTLKHSIEI 300 ASGFELGDST EAVGPPMDLS SNIKPDNIQT SSYLIETNPQ STIISSITTA KTKILETVSS 360 DSESIVANVA KTNSTHVINQ LSPTQDFLNN NGGIIPSTEI VVHDDVIREN DDTASNRDMV 420 MQVTSETITD AGERSNRKRG RKRKIDTLTM DAVKKHDGKP IDEAAKSLGV SRSTLKRFCR 480 DNKMTSWPLP KRNKKAVRTD SKLSQTSRSK QNLQQSSNVR FGLYGVAILL VRVKRWSCAI 540 KRHGFSGNWW SCGKHGHLSF KSDSIYQVAR LMVFLQRWKN KKSTRHAMQK RDHLESTEKT 600 LNKLNVDRKL PDSNLFYASP LRIKSNEVSD TRKVTVKATF KDDMIKVQIP ISARLFELQN 660 EVAHRIKLKS AGFRLKYKDE DNDLILLACD ADLQNLLGGY STSNNTTVKL IIQADD

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MNKKCILLKR RLPEWTPDVA NYLPKQFPQK ESAIRCYLHG YLALPVVDLF TSSCVGVLEI  60
LTSSKYISYA YEIQQIQSAL KVSSLLYFKT MYWVNLKPFI DFNGCQYTAN LITTQAFDGP  120
TIHVHDAHGQ NELEKIHNVL KFVCDTHNLP LTQTWATSPL TTFASHDQIL KKSCSSFHTR  180
CLGKVCMSTA ALPFYVLDLR MWSFRKACKE QHLDKSCAFV GRTLLSHGSC FCKDVTKLSQ  240
EEYPLVHYAR MSGLSSCFTI SLHSIESDND YVLEFFLPLH REDDSYVQNL VHTLKHSIEI  300
ASGFELGDST EAVGPPMDLS SNIKPDNIQT SSYLIETNPQ STIISSITTA KTKILETVSS  360
DSESIVANVA KTNSTHVINQ LSPTQDFLNN NGGIIPSTEI VVHDDVIREN DDTASNRDMV  420
MQVTSETITD AGERSNRKRG RKRKIDTLTM DAVKKHDGKP IDEAAKSLGV SRSTLKRFCR  480
DNKMTSWPLP KRNKKAVRTD SKLSQTSRSK QNLQQSSNVR FGLYGVAILL VRVKRWSCAI  540
KRHGFSGNWW SCGKHGHLSF KSDSIYQVAR LMVFLQRWKN KKSTRHAMQK RDHLESTEKT  600
LNKLNVDRKL PDSNLFYASP LRIKSNEVSD TRKVTVKATF KDDMIKVQIP ISARLFELQN  660
EVAHRIKLKS AGFRLKYKDE DNDLILLACD ADLQNLLGGY STSNNTTVKL IIQADD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-71	Nin-like family protein