PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc005001.1_g080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 46839.6 Da PI: 7.7699 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.7 | 1.6e-12 | 37 | 61 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtG+C yG+rC+F+H+ Cse_sc005001.1_g080.1 37 DEPDCIYYLRTGFCGYGSRCRFNHP 61 6899********************9 PP | |||||||
2 | zf-CCCH | 37.2 | 4.9e-12 | 85 | 109 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ Cse_sc005001.1_g080.1 85 QPVCQYYMRTGMCKFGASCKYHHPR 109 689********************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.8e-11 | 130 | 155 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ Cse_sc005001.1_g080.1 130 GEKECSYYVKTGQCKFGVTCKFHHPQ 155 7899********************97 PP | |||||||
4 | zf-CCCH | 37.4 | 4.2e-12 | 281 | 307 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p Cse_sc005001.1_g080.1 281 PGEPECQYYLKTGDCKFGSSCRYHHPP 307 5799*********************97 PP | |||||||
5 | zf-CCCH | 34 | 5e-11 | 329 | 353 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G++CkF H++ Cse_sc005001.1_g080.1 329 APLCTHYAQKGVCKFGPSCKFDHPM 353 68*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence |
MDTSQSDPVT QTGLQEPMWQ LGLGSGGGSE SYPERPDEPD CIYYLRTGFC GYGSRCRFNH 60 PTDRASSVVG AMRLSGGEYP ERIGQPVCQY YMRTGMCKFG ASCKYHHPRQ GAGSSSTVPL 120 NASGYPLRPG EKECSYYVKT GQCKFGVTCK FHHPQPTAIM QAPLQPQAPP QESVSSIPSA 180 LYQSMQPPVP GNWPVARPST LPGSYFPGTY GPVLLPPGMV PYPGWNPYQA PVSPAASPST 240 VGAGPYYAMP PHLSPPGPSY AGSYLSMSSS TIKEQSFPQR PGEPECQYYL KTGDCKFGSS 300 CRYHHPPEWT VPNTNFVLSP MGLPLRPGAP LCTHYAQKGV CKFGPSCKFD HPMGTLSYSP 360 SASSLADMPV APYPVGSSIA TLAPSSSSSE LRPELISASS KDGLSTSMPS VSGGSSLSQS 420 MPLSESSGGS STTHGGDAPH SA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-137 | C3H family protein |