PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004939.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

DBB

Protein Properties

Length: 302aa MW: 32888.9 Da PI: 6.3002

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004939.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.6	2.1e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ e++ C ++ lC+dC ++ H H++vpl Cse_sc004939.1_g080.1 4 QCNVCEKVEATVLCCADEAALCRDCDMKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	27.4	6.8e-09	52	85	1	34
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeH 34 s++++C+ ++e +fC +++ llC++C l+ H Cse_sc004939.1_g080.1 52 SKMPNCDICQETAGYFFCLEDRALLCRKCDLAVH 85 5799*****99*****************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MKIQCNVCEK VEATVLCCAD EAALCRDCDM KVHAANKLAS KHQRVPLSNS NSKMPNCDIC 60 QETAGYFFCL EDRALLCRKC DLAVHTVNPL VSAHQRFLLT GVKVGLEAVD HGSSSSTGKS 120 NSSEKLPKQE KSHSGPARNV PVSTASQVNK PMPAQAAEAG DFEPPKLPFS GGSSADSMQQ 180 WQFDDFLALT DFNSSYNYLD NGSSKANSGK LGESDGSPIL RAMEIELDSE DCLGQVPDAS 240 WAVPEIPSPP TASGLSWPKT RPHHQRGTVS DTFVPDVSYL PMPNFYESQQ NNTGIFKRRR 300 NF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-91	DBB family protein