PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004880.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 143aa    MW: 16729 Da    PI: 9.3107
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004880.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.64.3e-1845140190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                            ++Y++YA+  GF+++ks ++ + +++ + ++  +C+keg +++ + +      ++k++r+++ + tgC+a++++++++ +g++++ ++
  Cse_sc004880.1_g040.1  45 EMYSTYAEAGGFQIKKSGQRLT-KSEMVQHKYIMCNKEGIPRRINIDtldpqnSDKQKRNTTRHITGCRARIRLELDQvSGRYKLVQF 131
                            58***************99988.5666999999*******9988777789977777788888888*********************** PP

                   FAR1  82 eleHnHela 90 
                              +HnH l 
  Cse_sc004880.1_g040.1 132 IAKHNHVLI 140
                            ******996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MRSPRPTLYE HAETPNGSIY WEPHVEGIRV PEEGRYYDTI EEAIEMYSTY AEAGGFQIKK  60
SGQRLTKSEM VQHKYIMCNK EGIPRRINID TLDPQNSDKQ KRNTTRHITG CRARIRLELD  120
QVSGRYKLVQ FIAKHNHVLI PKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.12e-07FAR1 family protein