PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004839.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 346aa MW: 39367.4 Da PI: 8.7873

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004839.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ +++++G g+W+ +++ g+ R++k+c++rw +yl Cse_sc004839.1_g030.1 14 KGPWTPEEDEKLLAYIEKHGHGSWRVLPSKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.6	2.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia ++ +Rt++++k++w+++l Cse_sc004839.1_g030.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLS-KRTDNEIKNHWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDEKLLAYIE KHGHGSWRVL PSKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLSKRT DNEIKNHWNT HLKKRLLKMG 120 IDPMSHKPKN DTLNLSNDSR LKGTTNLSHM AQWESARLEA EARLVQQSKI HSMNTLSNKL 180 NTLSNKLSSN VCLMKSSTSI FSTNKFYELV VEERKSLGSC GNVEIVREEG KEVREYKKED 240 NVIGEFNDAA IPAAIDNTWT TQPLHLSNNS DDQRVPNDNF LEHFTDLLLH TSNFGDRCNF 300 TRGDNSDIGL VCNDKFKDNN CEGKSKNYWD NILHSANSAQ SSSLML

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDEKLLAYIE KHGHGSWRVL PSKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLSKRT DNEIKNHWNT HLKKRLLKMG  120
IDPMSHKPKN DTLNLSNDSR LKGTTNLSHM AQWESARLEA EARLVQQSKI HSMNTLSNKL  180
NTLSNKLSSN VCLMKSSTSI FSTNKFYELV VEERKSLGSC GNVEIVREEG KEVREYKKED  240
NVIGEFNDAA IPAAIDNTWT TQPLHLSNNS DDQRVPNDNF LEHFTDLLLH TSNFGDRCNF  300
TRGDNSDIGL VCNDKFKDNN CEGKSKNYWD NILHSANSAQ SSSLML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-101	MYB family protein