PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004816.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 423aa MW: 47172.5 Da PI: 5.9527

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004816.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	147	190	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WTteEd +l ++v +G+++W++I++ m gR +kqc++rw++ l Cse_sc004816.1_g050.1 147 WTTEEDSKLSKLVSDFGTKNWALISEFME-GRAGKQCRERWYNNL 190 ***************************.**********975 PP
2	Myb_DNA-binding	48.8	1.7e-15	198	238	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eE+ l++a+k++ ++ W+ Ia+ ++ gRt++ +k++w+ Cse_sc004816.1_g050.1 198 DWTEEEERVLIEAHKRMRTK-WSVIAKLLP-GRTENAIKNHWN 238 7*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MSKKGSPIAI VKKNSRPSDQ APDQRIQEGG FPNLPNSQML PLGSPSLYRP TPLLPSPNEF 60 VWNHIHQNFE NYQGTFIPSS TFGEFSSSSG GIASSFQGGG DVPSLTIDRS LSAGSMVLDF 120 GNQVISPLNP IADGIPNTSR NYTKRLWTTE EDSKLSKLVS DFGTKNWALI SEFMEGRAGK 180 QCRERWYNNL RPDIKTDDWT EEEERVLIEA HKRMRTKWSV IAKLLPGRTE NAIKNHWNAT 240 IRKKTTRKNR TSKDEPGNRK PKSTLLRDYI RDMASTPTTN TTTTNVSLPT TTNSVIVGNV 300 TAIPSDELPT IDYIPSYDEE WAFMKDLFQS TDTQPEIRTS IQPLAHTLEF NGNSVYGPST 360 SSSIPFEDNS NMFLNLNSHF FGDANSSSPI AETATLSNTE PFFHYEDMNM DLAFSGQGGI 420 FTS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MSKKGSPIAI VKKNSRPSDQ APDQRIQEGG FPNLPNSQML PLGSPSLYRP TPLLPSPNEF  60
VWNHIHQNFE NYQGTFIPSS TFGEFSSSSG GIASSFQGGG DVPSLTIDRS LSAGSMVLDF  120
GNQVISPLNP IADGIPNTSR NYTKRLWTTE EDSKLSKLVS DFGTKNWALI SEFMEGRAGK  180
QCRERWYNNL RPDIKTDDWT EEEERVLIEA HKRMRTKWSV IAKLLPGRTE NAIKNHWNAT  240
IRKKTTRKNR TSKDEPGNRK PKSTLLRDYI RDMASTPTTN TTTTNVSLPT TTNSVIVGNV  300
TAIPSDELPT IDYIPSYDEE WAFMKDLFQS TDTQPEIRTS IQPLAHTLEF NGNSVYGPST  360
SSSIPFEDNS NMFLNLNSHF FGDANSSSPI AETATLSNTE PFFHYEDMNM DLAFSGQGGI  420
FTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	4e-45	MYB family protein