PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc004788.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27302.7 Da PI: 6.3917 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.3e-13 | 58 | 104 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRRdriN +++Lr+l+ ++ K++Ka+ L k+ve++k+L Cse_sc004788.1_g030.1 58 KNHSEAEKRRRDRINAHLSTLRKLVSNS-----DKMDKATLLGKVVEHVKDL 104 78***********************997.....7****************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence |
MDNVFWSSWT QDGVSDQFNN WDHALLAPSV HQLSDSNYGG NNVGEWEDNK GAGSSASKNH 60 SEAEKRRRDR INAHLSTLRK LVSNSDKMDK ATLLGKVVEH VKDLKLEAKE LGKVFTIPTD 120 FDEVIIDHDS KTVSPCNNIL IKASVCCEDR AELFSEIKDA LNSLGLTMVE ADMTCLGGRI 180 ICNFILCLTN NTSENEVTSI KHSLKILLNR IVSTSSWTMS SNYRIKSKRQ RFFCSSSYDT 240 NGCE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 226 | 231 | KSKRQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-45 | bHLH family protein |