PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004760.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 415aa MW: 45669.6 Da PI: 7.886

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004760.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.9e-17	125	174	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cse_sc004760.1_g030.1 125 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 174 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MLDLNLTFAD QDHHMTNIPH EAEDSNTTNS SLVNAEEDDS LSADGDGDEI HCFNFDILKV 60 GDSGVLDQPS QTRTELVTRA LFPVSQEVHV NSLYRGKGEM VEVQHMKPVV QVGKKSRRGP 120 RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN 180 FNISDYQEDM NQTIKNLSKE DFVHILRRHG NGFSRGGSKY RGVPMNKSDG YEARMAPFLG 240 KKAYDKAAIG SDASAYVGET VASQYGNSHN LDLNLGISTP SGVGKGSTRN ENLGHPHLNY 300 GLHDLRRLQA DNPATMALKG LPVISEHGRS WPYPRSYPTF FPGYQVGATN TRSMGGASQG 360 PSNWAMQMHS QTNTPAAMFT AASSGFPTLA ATNSSHYYFQ IRQPPSPPPV PPPTP

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MLDLNLTFAD QDHHMTNIPH EAEDSNTTNS SLVNAEEDDS LSADGDGDEI HCFNFDILKV  60
GDSGVLDQPS QTRTELVTRA LFPVSQEVHV NSLYRGKGEM VEVQHMKPVV QVGKKSRRGP  120
RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN  180
FNISDYQEDM NQTIKNLSKE DFVHILRRHG NGFSRGGSKY RGVPMNKSDG YEARMAPFLG  240
KKAYDKAAIG SDASAYVGET VASQYGNSHN LDLNLGISTP SGVGKGSTRN ENLGHPHLNY  300
GLHDLRRLQA DNPATMALKG LPVISEHGRS WPYPRSYPTF FPGYQVGATN TRSMGGASQG  360
PSNWAMQMHS QTNTPAAMFT AASSGFPTLA ATNSSHYYFQ IRQPPSPPPV PPPTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	4e-70	AP2 family protein