PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004734.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 1347aa MW: 149924 Da PI: 8.922

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004734.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.4	4.7e-08	72	127	2	59
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetr 59 fY++YA++ GF vrk++s + ++++ +r+ C + gk++ + + +k +r+r++++ Cse_sc004734.1_g030.1 72 FYKNYARQHGFAVRKDRSDVR--SNQVRRRDILCHRAGKKRLKLIDPSKDQRNRESQK 127 9*************98876..6679************99988777777776655 PP

Sequence ? help Back to Top
Protein Sequence Length: 1347 aa Download sequence
MREKITVGMS SESHPSHVKS LYICIIMLDL DLNKCPNEED DDNSICELVD ETSDNEPFIG 60 QTFSTFEEAY IFYKNYARQH GFAVRKDRSD VRSNQVRRRD ILCHRAGKKR LKLIDPSKDQ 120 RNRESQKYIL KEYKVWLAES EGHLSGKLRT KIMTSQGSGA DPPVEAKSSP SSTPAAAPAS 180 VVDTPVVKDG DMSTDPMDVS DSLNRVNADN HGASNPSFSY NVLPNVNTNT ESPRQLSSNT 240 GMINSPGSSS FPRPSVPGVS DSSGPSFSYN IPQANNPLSG GHSFQPRMVV NSPQSEGSMN 300 VSLSATSSQP PVSGQLTRPT FMRGMPPPSS VAVPREASSN AANFSYNGHH QLLQNDQSMP 360 SKAAGHLAQG HGGPSASHVP HSGSHHGHLT SGATPTTSNF SSPPFWTPAA PHFQPAPGAP 420 RIPVTSGPPG RAPVPSPFNT VQTNSSPQQP LYGTYASNPP MMAPPQGAWL QPAPAGGLPR 480 PPFLPYPHAI PGSFPLQTQH MPLSSVPPSD AQPPGTSYGV PGVASISPAV SNSMPPVGSG 540 MSHELPPGTD NSKNVSAVGV REESVAVEQV DAWSAHRTET GIIYYYNAVT GQSTYQKPAG 600 FKGEPDKVYS QPIPISWEKC AGTDWSLVTT NDGKRYYYNA KTKLSSWQIP TDVSELKKKQ 660 EMDALKEQST SVPNAATQTE KESAPISLSA PAINTGGREA ISPAVSGVPV SSSALDLIKK 720 KLQDSTAPAT SSHTASTGPV SSELNGSAPV DQAGKGSHSE NGKDKEMLKD RGVAPFSKWE 780 KELPKFVFDP RFKAIPSYSA RRALFDHFVR TRAEEERKEK RAAHKAAIEG YKQLLDEAKE 840 DIDHNTDYQT FKRKWGHDSR FEAFDRKERE SLLKERVLAL KRSVEEEARA KRAASVSSFK 900 SMLRENKEIS ETSRWSKVKD FLRNDPRYKS VNHEDRETIF NEYISELKEF DEEAERESKA 960 KRNEEEKLKE RERALRKRKE REEQEVERVR SKARRKEAIE SYQALLVETI KDSQISWTDA 1020 KPKLEKDPQG RAANPHLDQS DLDKLFREHI KSLYDRCAHE YKALLADVIT TDAAAKEYED 1080 GKTVFNSWST AKRLLKDDAR YNKMPRKDRE SLWRRHVDDM QRKRKSTVDQ DMEAIDSRKH 1140 LSGSMSSNKS EAPEAAKPGT LIFKILKKEK MPELLLKARE TAKDLTKFSI DEDGMVTLTG 1200 NLFPNKVLKF MHKYRKDVEL ERSISWTDAK PKLEKDPQGR AANPHLDQSD FDKLFREHIK 1260 SLYDRCAHEY KALLADVITM DAAAKEYEDG KTVFNSWSTA KRLLKDDARY NKMSMICNER 1320 ENQRWTKTWR QLILGNTFQG LGEPIDD

Sequence ? help Back to Top

Protein Sequence Length: 1347 aa Download sequence

MREKITVGMS SESHPSHVKS LYICIIMLDL DLNKCPNEED DDNSICELVD ETSDNEPFIG  60
QTFSTFEEAY IFYKNYARQH GFAVRKDRSD VRSNQVRRRD ILCHRAGKKR LKLIDPSKDQ  120
RNRESQKYIL KEYKVWLAES EGHLSGKLRT KIMTSQGSGA DPPVEAKSSP SSTPAAAPAS  180
VVDTPVVKDG DMSTDPMDVS DSLNRVNADN HGASNPSFSY NVLPNVNTNT ESPRQLSSNT  240
GMINSPGSSS FPRPSVPGVS DSSGPSFSYN IPQANNPLSG GHSFQPRMVV NSPQSEGSMN  300
VSLSATSSQP PVSGQLTRPT FMRGMPPPSS VAVPREASSN AANFSYNGHH QLLQNDQSMP  360
SKAAGHLAQG HGGPSASHVP HSGSHHGHLT SGATPTTSNF SSPPFWTPAA PHFQPAPGAP  420
RIPVTSGPPG RAPVPSPFNT VQTNSSPQQP LYGTYASNPP MMAPPQGAWL QPAPAGGLPR  480
PPFLPYPHAI PGSFPLQTQH MPLSSVPPSD AQPPGTSYGV PGVASISPAV SNSMPPVGSG  540
MSHELPPGTD NSKNVSAVGV REESVAVEQV DAWSAHRTET GIIYYYNAVT GQSTYQKPAG  600
FKGEPDKVYS QPIPISWEKC AGTDWSLVTT NDGKRYYYNA KTKLSSWQIP TDVSELKKKQ  660
EMDALKEQST SVPNAATQTE KESAPISLSA PAINTGGREA ISPAVSGVPV SSSALDLIKK  720
KLQDSTAPAT SSHTASTGPV SSELNGSAPV DQAGKGSHSE NGKDKEMLKD RGVAPFSKWE  780
KELPKFVFDP RFKAIPSYSA RRALFDHFVR TRAEEERKEK RAAHKAAIEG YKQLLDEAKE  840
DIDHNTDYQT FKRKWGHDSR FEAFDRKERE SLLKERVLAL KRSVEEEARA KRAASVSSFK  900
SMLRENKEIS ETSRWSKVKD FLRNDPRYKS VNHEDRETIF NEYISELKEF DEEAERESKA  960
KRNEEEKLKE RERALRKRKE REEQEVERVR SKARRKEAIE SYQALLVETI KDSQISWTDA  1020
KPKLEKDPQG RAANPHLDQS DLDKLFREHI KSLYDRCAHE YKALLADVIT TDAAAKEYED  1080
GKTVFNSWST AKRLLKDDAR YNKMPRKDRE SLWRRHVDDM QRKRKSTVDQ DMEAIDSRKH  1140
LSGSMSSNKS EAPEAAKPGT LIFKILKKEK MPELLLKARE TAKDLTKFSI DEDGMVTLTG  1200
NLFPNKVLKF MHKYRKDVEL ERSISWTDAK PKLEKDPQGR AANPHLDQSD FDKLFREHIK  1260
SLYDRCAHEY KALLADVITM DAAAKEYEDG KTVFNSWSTA KRLLKDDARY NKMSMICNER  1320
ENQRWTKTWR QLILGNTFQG LGEPIDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1121	1126	QRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	8e-12	FAR1 family protein