PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004724.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 656aa MW: 76010.3 Da PI: 9.7297

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004724.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.7	5.1e-15	1	106	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkke 71 +Y eY ++ Fs+rks+sk++ +ge+t++ vC++ gk++++ k + +++r+++ + t+Cka+++ + Cse_sc004724.1_g070.1 1 MYLEYVLKARFSIRKSTSKRK--KGEVTHKYIVCNRAGKPRKTIVKdtlaqssqtvdnqqdgsnKPRKKRNSNYSVTDCKACVRFRAI 86 699***********99988..999***********9988889**********87777888889999********** PP FAR1 72 k.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc004724.1_g070.1 87 HgTSAFKLYEFVENHNHPLL 106 9***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MYLEYVLKAR FSIRKSTSKR KKGEVTHKYI VCNRAGKPRK TIVKDTLAQS SQTVDNQQDG 60 SNKPRKKRNS NYSVTDCKAC VRFRAIHGTS AFKLYEFVEN HNHPLLDENN TDLLKARPHH 120 LRVAFMGSYQ KVRGKPSDWK NFRRSVNKYI GRRDAQMLID KMNDRKKHVP NFSFEYHTVD 180 DVLSRMLWAD ETMKCNYNEF GDVVSFDATY RTNRYRMIFV PFTGIDHNQK CVTLGAALIS 240 DETIESYKWI LTSFKKAHVK EPILAVTNQD PALRSAVEAV FPEANHRLCM WHITQKLPGK 300 ICGEVDSDSE FKKLFHKLIW NMFIKPSEFE ERWHALIGMF NFSENKWLSE MFKMRDLWIP 360 TYFKELPMCC LMKTTSRSES SNAFFRIFSH SGNMLVQFML CFEAAMEKQR YVQRVMDNRT 420 FETTPVMFTD LPIERHACSE ILKGLYACSQ ISVTSEEGVT VSIIQQKNKQ NVVVINAKIP 480 ERYVSKRWRK DVLPSHVLDK RHRYGPCIEE TDNIASDIHA TIESCVDRLR NDTEKLKEFL 540 AQVTELKSKL DAELPPEKKK PNNEEIFQNL LGVTTPKQVI VKPPQGIRNK GCGTGGGRFI 600 GPGEKAKTKA KTKKKGRTCS ICDEQGYNMR TCKKKNAKNK AVQDDDSSFE EEDYDN

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MYLEYVLKAR FSIRKSTSKR KKGEVTHKYI VCNRAGKPRK TIVKDTLAQS SQTVDNQQDG  60
SNKPRKKRNS NYSVTDCKAC VRFRAIHGTS AFKLYEFVEN HNHPLLDENN TDLLKARPHH  120
LRVAFMGSYQ KVRGKPSDWK NFRRSVNKYI GRRDAQMLID KMNDRKKHVP NFSFEYHTVD  180
DVLSRMLWAD ETMKCNYNEF GDVVSFDATY RTNRYRMIFV PFTGIDHNQK CVTLGAALIS  240
DETIESYKWI LTSFKKAHVK EPILAVTNQD PALRSAVEAV FPEANHRLCM WHITQKLPGK  300
ICGEVDSDSE FKKLFHKLIW NMFIKPSEFE ERWHALIGMF NFSENKWLSE MFKMRDLWIP  360
TYFKELPMCC LMKTTSRSES SNAFFRIFSH SGNMLVQFML CFEAAMEKQR YVQRVMDNRT  420
FETTPVMFTD LPIERHACSE ILKGLYACSQ ISVTSEEGVT VSIIQQKNKQ NVVVINAKIP  480
ERYVSKRWRK DVLPSHVLDK RHRYGPCIEE TDNIASDIHA TIESCVDRLR NDTEKLKEFL  540
AQVTELKSKL DAELPPEKKK PNNEEIFQNL LGVTTPKQVI VKPPQGIRNK GCGTGGGRFI  600
GPGEKAKTKA KTKKKGRTCS ICDEQGYNMR TCKKKNAKNK AVQDDDSSFE EEDYDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	44	KRKKGEVTHKYIVCNRAGKPRKTIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-50	FAR1 family protein