PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004648.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 332aa    MW: 37491.3 Da    PI: 5.8343
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004648.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-152875148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  Cse_sc004648.1_g020.1 28 KGLWSPEEDEKLMNYMITNGQGCWSDIARNAGLQRCGKSCRLRWINYL 75
                           678*******************************************97 PP
2Myb_DNA-binding52.98.5e-1781124146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+++++E+el+v+++ +lG++ W+ Ia++++ gRt++++k++w++
  Cse_sc004648.1_g020.1  81 RGAFSPQEEELIVHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 124
                            89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MRKPIGGNDT NNLMSSGNST TMAMKMRKGL WSPEEDEKLM NYMITNGQGC WSDIARNAGL  60
QRCGKSCRLR WINYLRPDLK RGAFSPQEEE LIVHLHSLLG NRWSQIAARL PGRTDNEIKN  120
FWNSTVKKRL KKSSSDSSSP NTSHDSSSSE HRDIMGGLIS MHDSSNIMAM YMDAARRSSL  180
SSLQAMNMNQ MMEQLPLTSD HLGQNMPIMH ASCYGTAQVG MDGNGISYHG CYEIFGGNLG  240
LEDEMFNIPP LDNMPNKNQD MKIENLDDRN TMIMANNMNN IIMNQCYNNS KHKVQAIATG  300
FENCWEGGDE LKVEEWDFEE LMREASSFPS LD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-70MYB family protein